cmtk::SplineWarpCongealingFunctional Member List

This is the complete list of members for cmtk::SplineWarpCongealingFunctional, including all inherited members.
AllocateStorage()cmtk::GroupwiseRegistrationFunctionalBase [virtual]
CongealingFunctional()cmtk::CongealingFunctional< SplineWarpXform >
CreateGaussianKernels()cmtk::CongealingFunctional< SplineWarpXform > [protected]
CreateTemplateGrid(const DataGrid::IndexType &dims, const UniformVolume::CoordinateVectorType &deltas)cmtk::GroupwiseRegistrationFunctionalBase [virtual]
CreateTemplateGridFromTargets(const std::vector< UniformVolume::SmartPtr > &targets, const int downsample=0)cmtk::GroupwiseRegistrationFunctionalBase [virtual]
DebugWriteImages()cmtk::GroupwiseRegistrationFunctionalBase
Evaluate()cmtk::SplineWarpCongealingFunctional [virtual]
EvaluateAlongGradientAt(ParameterVectorType &v)cmtk::Functional [inline, virtual]
EvaluateAt(CoordinateVector &v)cmtk::SplineWarpCongealingFunctional [inline, virtual]
cmtk::Functional::EvaluateAt(ParameterVectorType &v)cmtk::Functional [inline, virtual]
EvaluateLocalGradientThreadFunc(void *args)cmtk::SplineWarpCongealingFunctional [private, static]
EvaluateThread(void *args, const size_t taskIdx, const size_t taskCnt, const size_t threadIdx, const size_t)cmtk::SplineWarpCongealingFunctional [private, static]
EvaluateWithGradient(CoordinateVector &v, CoordinateVector &g, const Types::Coordinate step=1)cmtk::SplineWarpCongealingFunctional [virtual]
cmtk::Functional::EvaluateWithGradient(ParameterVectorType &v, ParameterVectorType &g, const Types::Coordinate step=1)cmtk::Functional [virtual]
ForceZeroSumGradient(CoordinateVector &g) const cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected, virtual]
GetActiveXformByIndex(const size_t idx) constcmtk::GroupwiseRegistrationFunctionalXformTemplateBase< SplineWarpXform > [inline, virtual]
GetActiveXformByIndex(const size_t idx)cmtk::GroupwiseRegistrationFunctionalXformTemplateBase< SplineWarpXform > [inline, virtual]
GetGenericActiveXformByIndex(const size_t idx) const cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
GetGenericActiveXformByIndex(const size_t idx)cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
GetGenericXformByIndex(const size_t idx) const cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
GetGenericXformByIndex(const size_t idx)cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
GetNumberOfTargetImages() const cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
GetOriginalTargetImage(const size_t imageIdx)cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
GetOriginalTargetImage(const size_t imageIdx) const cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
GetOriginalTargetImages(std::vector< UniformVolume::SmartPtr > &tImages)cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
GetOriginalTargetImages()cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
GetParamStep(const size_t idx, const Types::Coordinate mmStep=1) const cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
GetParamVector(CoordinateVector &v)cmtk::GroupwiseRegistrationFunctionalBase [virtual]
cmtk::Functional::GetParamVector(ParameterVectorType &)cmtk::Functional [inline, virtual]
GetReformattedImage(const UniformVolume::SmartPtr &targetGrid, const size_t idx) const cmtk::GroupwiseRegistrationFunctionalBase [protected, virtual]
GetTemplateGrid()cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
GetTemplateGrid() const cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
GetXformByIndex(const size_t idx) constcmtk::GroupwiseRegistrationFunctionalXformTemplateBase< SplineWarpXform > [inline, virtual]
GetXformByIndex(const size_t idx)cmtk::GroupwiseRegistrationFunctionalXformTemplateBase< SplineWarpXform > [inline, virtual]
GroupwiseRegistrationFunctionalBase()cmtk::GroupwiseRegistrationFunctionalBase
GroupwiseRegistrationFunctionalXformTemplate()cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform >
GroupwiseRegistrationFunctionalXformTemplateBase()cmtk::GroupwiseRegistrationFunctionalXformTemplateBase< SplineWarpXform >
HistogramBinType typedefcmtk::CongealingFunctional< SplineWarpXform >
HistogramType typedefcmtk::SplineWarpCongealingFunctional
InitializeXforms(const Types::Coordinate gridSpacing, const bool exactSpacing=true)cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [inline, virtual]
InitializeXformsFromAffine(const Types::Coordinate gridSpacing, std::vector< AffineXform::SmartPtr > initialAffineXformsVector, const bool exactSpacing=true)cmtk::SplineWarpCongealingFunctional [virtual]
InterpolateAllImages()cmtk::GroupwiseRegistrationFunctionalBase [protected, virtual]
InterpolateImage(const size_t idx, byte *const destination)cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected, virtual]
m_ActiveControlPointFlagscmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected]
m_ActiveImagesFromcmtk::GroupwiseRegistrationFunctionalBase [protected]
m_ActiveImagesTocmtk::GroupwiseRegistrationFunctionalBase [protected]
m_ActiveXformsFromcmtk::GroupwiseRegistrationFunctionalBase [protected]
m_ActiveXformsTocmtk::GroupwiseRegistrationFunctionalBase [protected]
m_BendingEnergyWeightcmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected]
m_ControlPointIndexLastcmtk::SplineWarpCongealingFunctional [private]
m_ControlPointIndexLockcmtk::SplineWarpCongealingFunctional [private]
m_ControlPointIndexNextcmtk::SplineWarpCongealingFunctional [private]
m_Datacmtk::GroupwiseRegistrationFunctionalBase [protected]
m_DeactivateUninformativeModecmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected]
m_EntropyByPixelcmtk::SplineWarpCongealingFunctional [private]
m_ForceZeroSumcmtk::GroupwiseRegistrationFunctionalBase [protected]
m_ForceZeroSumFirstNcmtk::GroupwiseRegistrationFunctionalBase [protected]
m_ForceZeroSumNoAffinecmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected]
m_FreeAndRereadImagescmtk::GroupwiseRegistrationFunctionalBase [protected]
m_GaussianSmoothImagesSigmacmtk::GroupwiseRegistrationFunctionalBase [protected]
m_HistogramBinscmtk::GroupwiseRegistrationFunctionalXformTemplateBase< SplineWarpXform > [protected]
m_HistogramKernelcmtk::CongealingFunctional< SplineWarpXform > [protected]
m_HistogramKernelRadiuscmtk::CongealingFunctional< SplineWarpXform > [protected]
m_HistogramKernelRadiusMaxcmtk::GroupwiseRegistrationFunctionalXformTemplateBase< SplineWarpXform > [protected]
m_ImageVectorcmtk::GroupwiseRegistrationFunctionalBase [protected]
m_InitialAffineXformsVectorcmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected]
m_InitialRotationsVectorcmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected]
m_JacobianConstraintWeightcmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected]
m_MaximumNumberOfPixelsPerLineVOIcmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected]
m_MaximumNumberOfPixelsVOIcmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected]
m_MaxRelativeNumberOutsidePixelscmtk::GroupwiseRegistrationFunctionalXformTemplateBase< SplineWarpXform > [protected]
m_NeedsUpdateStandardDeviationByPixelcmtk::CongealingFunctional< SplineWarpXform > [protected]
m_NumberOfActiveControlPointscmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected]
m_NumberOfTaskscmtk::GroupwiseRegistrationFunctionalBase [protected]
m_NumberOfThreadscmtk::GroupwiseRegistrationFunctionalBase [protected]
m_OriginalImageVectorcmtk::GroupwiseRegistrationFunctionalBase [protected]
m_PaddingValuecmtk::GroupwiseRegistrationFunctionalBase [protected, static]
m_ParametersPerXformcmtk::GroupwiseRegistrationFunctionalBase [protected]
m_ParamStepArraycmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected]
m_PartialGradientModecmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected]
m_PartialGradientThresholdcmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected]
m_PrivateUserBackgroundValuecmtk::GroupwiseRegistrationFunctionalXformTemplateBase< SplineWarpXform > [protected]
m_ProbabilisticSampleDensitycmtk::GroupwiseRegistrationFunctionalBase [protected]
m_ProbabilisticSamplescmtk::GroupwiseRegistrationFunctionalBase [protected]
m_ProbabilisticSampleUpdatesAftercmtk::GroupwiseRegistrationFunctionalBase [protected]
m_ProbabilisticSampleUpdatesSincecmtk::GroupwiseRegistrationFunctionalBase [protected]
m_RepeatIntensityHistogramMatchingcmtk::GroupwiseRegistrationFunctionalBase [protected]
m_StandardDeviationByPixelcmtk::CongealingFunctional< SplineWarpXform > [protected]
m_StaticThreadStoragecmtk::SplineWarpCongealingFunctional [private]
m_TempDatacmtk::GroupwiseRegistrationFunctionalBase [protected]
m_TemplateDatacmtk::GroupwiseRegistrationFunctionalBase [protected]
m_TemplateGridcmtk::GroupwiseRegistrationFunctionalBase [protected]
m_TemplateNumberOfPixelscmtk::GroupwiseRegistrationFunctionalBase [protected]
m_TemplateNumberOfSamplescmtk::GroupwiseRegistrationFunctionalBase [protected]
m_ThreadHistogramscmtk::CongealingFunctional< SplineWarpXform > [protected]
m_UserBackgroundFlagcmtk::GroupwiseRegistrationFunctionalBase [protected]
m_UserBackgroundValuecmtk::GroupwiseRegistrationFunctionalBase [protected]
m_UseTemplateDatacmtk::GroupwiseRegistrationFunctionalBase [protected]
m_VolumeOfInfluenceArraycmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected]
m_WarpFastModecmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected]
m_XformVectorcmtk::GroupwiseRegistrationFunctionalBase [protected]
ParameterType typedefcmtk::Functional
ParameterVectorType typedefcmtk::Functional
ParamVectorDim() const cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
RefineTransformationGrids()cmtk::SplineWarpCongealingFunctional [virtual]
ReturnType typedefcmtk::Functional
Self typedefcmtk::SplineWarpCongealingFunctional
SetActiveImagesFromTo(const size_t from, const size_t to)cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
SetActiveXformsFromTo(const size_t from, const size_t to)cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [inline, virtual]
SetCropImageHistograms(const bool crop=true)cmtk::GroupwiseRegistrationFunctionalXformTemplateBase< SplineWarpXform > [inline, virtual]
SetDeactivateUninformativeMode(const bool dum=true)cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [inline]
SetForceZeroSum(const bool forceZeroSum=true)cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
SetForceZeroSumFirstN(const size_t forceZeroSumFirstN)cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
SetForceZeroSumNoAffine(const bool noaffine=true)cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [inline]
SetFreeAndRereadImages(const bool flag=true)cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
SetGaussianSmoothImagesSigma(const Types::Coordinate gaussianSmoothImagesSigma)cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
SetNumberOfHistogramBins(const size_t numberOfHistogramBins)cmtk::CongealingFunctional< SplineWarpXform > [virtual]
SetParameter(const size_t param, const Types::Coordinate value)cmtk::GroupwiseRegistrationFunctionalBase [virtual]
SetParameter(const size_t xform, const size_t param, const Types::Coordinate value)cmtk::GroupwiseRegistrationFunctionalBase [virtual]
SetParamVector(CoordinateVector &v)cmtk::GroupwiseRegistrationFunctionalBase [virtual]
SetParamVector(CoordinateVector &v, const size_t xformIdx)cmtk::GroupwiseRegistrationFunctionalBase [virtual]
cmtk::Functional::SetParamVector(ParameterVectorType &)cmtk::Functional [inline, virtual]
SetPartialGradientMode(const bool partialGradientMode=false, const float partialGradientThreshold=0.0)cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [inline]
SetProbabilisticSampleDensity(const float density)cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
SetProbabilisticSampleUpdatesAfter(const int iterations)cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
SetRepeatIntensityHistogramMatching(const bool flag=true)cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
SetTargetImages(std::vector< UniformVolume::SmartPtr > &tImages)cmtk::GroupwiseRegistrationFunctionalBase [virtual]
SetTemplateGrid(UniformVolume::SmartPtr &templateGrid, const int downsample=1, const bool useTemplateData=false)cmtk::SplineWarpCongealingFunctional [virtual]
SetUserBackgroundValue(const byte value=0)cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
SetXforms(const std::vector< Xform::SmartPtr > &xformVector)cmtk::GroupwiseRegistrationFunctionalBase [inline]
SmartPtr typedefcmtk::SplineWarpCongealingFunctional
Superclass typedefcmtk::SplineWarpCongealingFunctional
UnsetUserBackgroundValue()cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
UpdateActiveControlPoints()cmtk::SplineWarpCongealingFunctional [private, virtual]
UpdateParamStepArray()cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected, virtual]
UpdateProbabilisticSamples()cmtk::GroupwiseRegistrationFunctionalBase [protected, virtual]
UpdateStandardDeviationByPixel()cmtk::SplineWarpCongealingFunctional [private, virtual]
UpdateVolumesOfInfluence()cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [protected, virtual]
VariableParamVectorDim() const cmtk::GroupwiseRegistrationFunctionalBase [inline, virtual]
Wiggle()cmtk::CongealingFunctional< SplineWarpXform > [protected, virtual]
XformPointer typedefcmtk::CongealingFunctional< SplineWarpXform >
XformType typedefcmtk::CongealingFunctional< SplineWarpXform >
~CongealingFunctional()cmtk::CongealingFunctional< SplineWarpXform > [virtual]
~Functional()cmtk::Functional [inline, virtual]
~GroupwiseRegistrationFunctionalBase()cmtk::GroupwiseRegistrationFunctionalBase [virtual]
~GroupwiseRegistrationFunctionalXformTemplate()cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > [inline, virtual]
~GroupwiseRegistrationFunctionalXformTemplateBase()cmtk::GroupwiseRegistrationFunctionalXformTemplateBase< SplineWarpXform > [virtual]
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