cmtkGroupwiseRegistrationOutput.h

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/*
//
//  Copyright 1997-2009 Torsten Rohlfing
//  Copyright 2004-2009 SRI International
//
//  This file is part of the Computational Morphometry Toolkit.
//
//  http://www.nitrc.org/projects/cmtk/
//
//  The Computational Morphometry Toolkit is free software: you can
//  redistribute it and/or modify it under the terms of the GNU General Public
//  License as published by the Free Software Foundation, either version 3 of
//  the License, or (at your option) any later version.
//
//  The Computational Morphometry Toolkit is distributed in the hope that it
//  will be useful, but WITHOUT ANY WARRANTY; without even the implied
//  warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
//  GNU General Public License for more details.
//
//  You should have received a copy of the GNU General Public License along
//  with the Computational Morphometry Toolkit.  If not, see
//  <http://www.gnu.org/licenses/>.
//
//  $Revision: 2398 $
//
//  $LastChangedDate: 2010-10-05 14:54:37 -0700 (Tue, 05 Oct 2010) $
//
//  $LastChangedBy: torstenrohlfing $
//
*/

#ifndef __cmtkGroupwiseRegistrationOutput_h_included_
#define __cmtkGroupwiseRegistrationOutput_h_included_

#include <cmtkconfig.h>

#include <Registration/cmtkGroupwiseRegistrationFunctionalBase.h>
#include <System/cmtkSmartPtr.h>
#include <Registration/cmtkReformatVolume.h>
#include <Base/cmtkInterpolator.h>

namespace
cmtk
{


class GroupwiseRegistrationOutput
{
public:
  typedef GroupwiseRegistrationFunctionalBase FunctionalType;

  typedef FunctionalType::SmartPtr FunctionalPointer;

  GroupwiseRegistrationOutput( FunctionalPointer& functional = FunctionalPointer::Null ) :
    m_Verbose( false ),
    m_ExistingTemplatePath( false ),
    m_OutputRootDirectory( NULL )
  {
    this->m_Functional = functional;
  }

  void SetExistingTemplatePath( const bool flag )
  {
    this->m_ExistingTemplatePath = flag;
  }

  template<class TFunctional>
  void SetFunctional( SmartPointer<TFunctional>& functional )
  {
    this->m_Functional = FunctionalType::SmartPtr::DynamicCastFrom( functional );
  }

  void SetOutputRootDirectory( const char* rootDir )
  {
    this->m_OutputRootDirectory = rootDir;
  }

  bool WriteGroupwiseArchive( const char* path ) const;  
  
  bool WriteXformsSeparateArchives( const char* path, const char* templatePath );
  
  bool WriteAverageImage
  ( const char* path, //<! Path of output image.
    const cmtk::Interpolators::InterpolationEnum interp = cmtk::Interpolators::LINEAR, 
    const bool useTemplateData = false 
    );
  
private:
  FunctionalPointer m_Functional;

  bool m_Verbose;

  bool m_ExistingTemplatePath;

  const char* m_OutputRootDirectory;
};


} // namespace cmtk

#endif // #ifndef __cmtkGroupwiseRegistrationOutput_h_included_