cmtkSimpleLevelsetCommandLineBase.h

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/*
//
//  Copyright 1997-2010 Torsten Rohlfing
//
//  Copyright 2004-2010 SRI International
//
//  This file is part of the Computational Morphometry Toolkit.
//
//  http://www.nitrc.org/projects/cmtk/
//
//  The Computational Morphometry Toolkit is free software: you can
//  redistribute it and/or modify it under the terms of the GNU General Public
//  License as published by the Free Software Foundation, either version 3 of
//  the License, or (at your option) any later version.
//
//  The Computational Morphometry Toolkit is distributed in the hope that it
//  will be useful, but WITHOUT ANY WARRANTY; without even the implied
//  warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
//  GNU General Public License for more details.
//
//  You should have received a copy of the GNU General Public License along
//  with the Computational Morphometry Toolkit.  If not, see
//  <http://www.gnu.org/licenses/>.
//
//  $Revision: 2398 $
//
//  $LastChangedDate: 2010-10-05 14:54:37 -0700 (Tue, 05 Oct 2010) $
//
//  $LastChangedBy: torstenrohlfing $
//
*/

#ifndef __cmtkSimpleLevelsetCommandLineBase_h_included_
#define __cmtkSimpleLevelsetCommandLineBase_h_included_

#include <cmtkconfig.h>

#include <Segmentation/cmtkSimpleLevelset.h>

#include <System/cmtkCommandLine.h>

namespace
cmtk
{


class SimpleLevelsetCommandLineBase
{
public:
  typedef SimpleLevelsetCommandLineBase Self;

  SimpleLevelsetCommandLineBase();

  int Init( const int argc, const char* argv[] );

  CommandLine& GetCommandLine()
  {
    return this->m_CommandLine;
  }

protected:
  bool m_Verbose;

  Types::Coordinate m_ScaleInitialSphere;

  Types::Coordinate m_FilterSigma;

  Types::Coordinate m_TimeDelta;

  Types::Coordinate m_LevelsetThreshold;
  
  int m_NumberOfIterations;
  
  bool m_ForceIterations;

  bool m_Binarize;
  
  const char* m_InFile;

  const char* m_OutFile;

  UniformVolume::SmartConstPtr m_Volume;
  
#ifdef CMTK_USE_SQLITE

  const char* m_UpdateDB;
#endif  

private:
  cmtk::CommandLine m_CommandLine;
};

} // namespace cmtk

#endif // #ifndef __cmtkSimpleLevelsetCommandLineBase_h_included_