cmtk::AtlasSegmentation Class Reference

#include <cmtkAtlasSegmentation.h>

Collaboration diagram for cmtk::AtlasSegmentation:

List of all members.

Public Member Functions
	AtlasSegmentation (UniformVolume::SmartPtr &targetImage, UniformVolume::SmartPtr &atlasImage, UniformVolume::SmartPtr &atlasLabels)
	Constructor: compute registrations.
AffineXform::SmartPtr &	GetAffineXform ()
	Get affine transformation.
WarpXform::SmartPtr	GetWarpXform ()
	Get nonrigid transformation.
SplineWarpXform::SmartPtr	GetSplineWarpXform ()
	Get nonrigid spline transformation.
UniformVolume::SmartPtr &	GetLabelMap ()
	Get reformatted label map.
void	SetVerbose (const bool verbose)
	Set verbose flag.
void	SetFast (const bool fast)
	Set fast flag.
Private Member Functions
void	RegisterAffine ()
	Compute affine registration.
void	RegisterSpline ()
	Compute spline registration.
void	ReformatLabels ()
	Compute label map.
Private Attributes
bool	m_Verbose
	Verbose flag.
bool	m_Fast
	Flag for "fast" computation.
UniformVolume::SmartPtr	m_TargetImage
	Target image.
UniformVolume::SmartPtr	m_AtlasImage
	Atlas image.
UniformVolume::SmartPtr	m_AtlasLabels
	Atlas labels.
AffineXform::SmartPtr	m_AffineXform
	Affine registration transformation.
WarpXform::SmartPtr	m_WarpXform
	Nonrigid, B-spline transformation.
UniformVolume::SmartPtr	m_LabelMap
	Output label map.

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Detailed Description

Definition at line 42 of file cmtkAtlasSegmentation.h.

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Constructor & Destructor Documentation

cmtk::AtlasSegmentation::AtlasSegmentation	(	UniformVolume::SmartPtr &	targetImage,
		UniformVolume::SmartPtr &	atlasImage,
		UniformVolume::SmartPtr &	atlasLabels
	)

Constructor: compute registrations.

Definition at line 41 of file cmtkAtlasSegmentation.cxx.

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Member Function Documentation

AffineXform::SmartPtr& cmtk::AtlasSegmentation::GetAffineXform

(

)

[inline]

Get affine transformation.

Definition at line 49 of file cmtkAtlasSegmentation.h.

UniformVolume::SmartPtr& cmtk::AtlasSegmentation::GetLabelMap

(

)

[inline]

Get reformatted label map.

Definition at line 71 of file cmtkAtlasSegmentation.h.

SplineWarpXform::SmartPtr cmtk::AtlasSegmentation::GetSplineWarpXform

(

)

[inline]

Get nonrigid spline transformation.

Definition at line 65 of file cmtkAtlasSegmentation.h.

WarpXform::SmartPtr cmtk::AtlasSegmentation::GetWarpXform

(

)

[inline]

Get nonrigid transformation.

Definition at line 57 of file cmtkAtlasSegmentation.h.

void cmtk::AtlasSegmentation::ReformatLabels

(

)

[private]

Compute label map.

Definition at line 124 of file cmtkAtlasSegmentation.cxx.

References cmtk::Interpolators::PARTIALVOLUME, cmtk::ReformatVolume::PlainReformat(), cmtk::ReformatVolume::SetFloatingVolume(), cmtk::ReformatVolume::SetInterpolation(), cmtk::ReformatVolume::SetReferenceVolume(), and cmtk::ReformatVolume::SetWarpXform().

void cmtk::AtlasSegmentation::RegisterAffine

(

)

[private]

Compute affine registration.

Definition at line 53 of file cmtkAtlasSegmentation.cxx.

References cmtk::AffineRegistration::AddNumberDOFs(), cmtk::Console::flush(), cmtk::AffineRegistration::GetTransformation(), cmtk::VoxelRegistration::Register(), and cmtk::StdErr.

void cmtk::AtlasSegmentation::RegisterSpline

(

)

[private]

Compute spline registration.

Definition at line 86 of file cmtkAtlasSegmentation.cxx.

References cmtk::Console::flush(), cmtk::ElasticRegistration::GetTransformation(), cmtk::VoxelRegistration::Register(), and cmtk::StdErr.

void cmtk::AtlasSegmentation::SetFast

(

const bool

fast )

[inline]

Set fast flag.

Definition at line 85 of file cmtkAtlasSegmentation.h.

void cmtk::AtlasSegmentation::SetVerbose

(

const bool

verbose )

[inline]

Set verbose flag.

Definition at line 79 of file cmtkAtlasSegmentation.h.

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Member Data Documentation

AffineXform::SmartPtr cmtk::AtlasSegmentation::m_AffineXform [private]

Affine registration transformation.

Definition at line 107 of file cmtkAtlasSegmentation.h.

UniformVolume::SmartPtr cmtk::AtlasSegmentation::m_AtlasImage [private]

Atlas image.

Definition at line 101 of file cmtkAtlasSegmentation.h.

UniformVolume::SmartPtr cmtk::AtlasSegmentation::m_AtlasLabels [private]

Atlas labels.

Definition at line 104 of file cmtkAtlasSegmentation.h.

bool cmtk::AtlasSegmentation::m_Fast [private]

Flag for "fast" computation.

Definition at line 95 of file cmtkAtlasSegmentation.h.

UniformVolume::SmartPtr cmtk::AtlasSegmentation::m_LabelMap [private]

Output label map.

Definition at line 119 of file cmtkAtlasSegmentation.h.

UniformVolume::SmartPtr cmtk::AtlasSegmentation::m_TargetImage [private]

Target image.

Definition at line 98 of file cmtkAtlasSegmentation.h.

bool cmtk::AtlasSegmentation::m_Verbose [private]

Verbose flag.

Definition at line 92 of file cmtkAtlasSegmentation.h.

WarpXform::SmartPtr cmtk::AtlasSegmentation::m_WarpXform [private]

Nonrigid, B-spline transformation.

Definition at line 113 of file cmtkAtlasSegmentation.h.

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The documentation for this class was generated from the following files:

• libs/Segmentation/cmtkAtlasSegmentation.h
• libs/Segmentation/cmtkAtlasSegmentation.cxx