cmtkAffineRegistrationCommandLine.h

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/*
//
//  Copyright 1997-2009 Torsten Rohlfing
//
//  Copyright 2004-2010 SRI International
//
//  This file is part of the Computational Morphometry Toolkit.
//
//  http://www.nitrc.org/projects/cmtk/
//
//  The Computational Morphometry Toolkit is free software: you can
//  redistribute it and/or modify it under the terms of the GNU General Public
//  License as published by the Free Software Foundation, either version 3 of
//  the License, or (at your option) any later version.
//
//  The Computational Morphometry Toolkit is distributed in the hope that it
//  will be useful, but WITHOUT ANY WARRANTY; without even the implied
//  warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
//  GNU General Public License for more details.
//
//  You should have received a copy of the GNU General Public License along
//  with the Computational Morphometry Toolkit.  If not, see
//  <http://www.gnu.org/licenses/>.
//
//  $Revision: 2752 $
//
//  $LastChangedDate: 2011-01-17 11:33:31 -0800 (Mon, 17 Jan 2011) $
//
//  $LastChangedBy: torstenrohlfing $
//
*/

#ifndef __cmtkAffineRegistrationCommandLine_h_included_
#define __cmtkAffineRegistrationCommandLine_h_included_

#include <cmtkconfig.h>

#include <Registration/cmtkAffineRegistration.h>

namespace 
cmtk
{


class AffineRegistrationCommandLine : 
  public AffineRegistration 
{
public:
  typedef AffineRegistrationCommandLine Self;

  typedef SmartPointer<Self> SmartPtr;

  typedef AffineRegistration Superclass;

  AffineRegistrationCommandLine ( const int argc, const char *argv [] );

  virtual CallbackResult Register ();

protected:
  virtual CallbackResult InitRegistration();

  virtual void OutputResult ( const CoordinateVector* );

  virtual void EnterResolution( CoordinateVector::SmartPtr&, Functional::SmartPtr&, const int, const int );

private:
  const char* m_InitialXformPath;

  unsigned int m_AutoMultiLevels;

  const char* m_ReformattedImagePath;

  const char *Studylist;

  const char* OutMatrixName;

  const char* OutParametersName;

  const char* m_OutputPathITK;

  const char *Study1;

  const char *Study2;

#ifdef CMTK_USE_SQLITE

  const char* m_UpdateDB;
#endif

  const char *Protocol;

  const char *Time;

  bool Verbose;

  bool InitXlate;

  void OutputResultMatrix( const char* matrixName ) const;

  void OutputResultParameters( const char* paramsName, const CoordinateVector& v ) const;

  void OutputResultList( const char* studyList ) const;

};


} // namespace cmtk

#endif // #ifndef _COMMANDLINEVOXELREGISTRATION_H_