Class for command line-controlled affine registration. More...

#include <cmtkAffineRegistrationCommandLine.h>

Inheritance diagram for cmtk::AffineRegistrationCommandLine:

Collaboration diagram for cmtk::AffineRegistrationCommandLine:

Public Types
typedef AffineRegistrationCommandLine	Self
	This class.
typedef SmartPointer< Self >	SmartPtr
	Smart pointer.
typedef AffineRegistration	Superclass
	Convenience typedef.
Public Member Functions
	AffineRegistrationCommandLine (const int argc, const char *argv[])
	Constructor.
virtual CallbackResult	Register ()
	Perform registration.
Protected Member Functions
virtual CallbackResult	InitRegistration ()
	Initialize registration.
virtual void	OutputResult (const CoordinateVector *)
	Output registration result.
virtual void	EnterResolution (CoordinateVector::SmartPtr &, Functional::SmartPtr &, const int, const int)
	Enter resolution level.
Private Member Functions
void	OutputResultMatrix (const char *matrixName) const
	Output result as matrix (text) file.
void	OutputResultParameters (const char *paramsName, const CoordinateVector &v) const
	Output result (and statistics) as studylist archive.
void	OutputResultList (const char *studyList) const
	Output result (and statistics) as studylist archive.
Private Attributes
const char *	m_InitialXformPath
	Path of the actual input transformation, if any.
unsigned int	m_AutoMultiLevels
	Number of levels for automatic parameter generation.
const char *	m_ReformattedImagePath
	Path for reformatted floating image.
const char *	Studylist
	Name of output studylist.
const char *	OutMatrixName
	Name of the output matrix file.
const char *	OutParametersName
	Name of the output parameter file.
const char *	m_OutputPathITK
	Name of output transformation file in ITK format.
const char *	Study1
	Name of first study to be registered.
const char *	Study2
	Name of second study to be registered.
const char *	Protocol
	Name of protocol output file.
const char *	Time
	Name of elapsed time output file.
bool	Verbose
	Verbosity flag.
bool	InitXlate
	Flag for initial center-of-mass translation.

Detailed Description

Class for command line-controlled affine registration.

Author:: T. Rohlfing

Definition at line 50 of file cmtkAffineRegistrationCommandLine.h.

Member Typedef Documentation

typedef AffineRegistrationCommandLine cmtk::AffineRegistrationCommandLine::Self

This class.

Definition at line 56 of file cmtkAffineRegistrationCommandLine.h.

typedef SmartPointer<Self> cmtk::AffineRegistrationCommandLine::SmartPtr

Smart pointer.

Definition at line 59 of file cmtkAffineRegistrationCommandLine.h.

typedef AffineRegistration cmtk::AffineRegistrationCommandLine::Superclass

Convenience typedef.

Reimplemented from cmtk::AffineRegistration.

Definition at line 62 of file cmtkAffineRegistrationCommandLine.h.

Member Data Documentation

bool cmtk::AffineRegistrationCommandLine::InitXlate [private]

Flag for initial center-of-mass translation.

This defaults to 'no' and is set to 'yes' by -i or --initxlate command line switch.

Definition at line 167 of file cmtkAffineRegistrationCommandLine.h.

unsigned int cmtk::AffineRegistrationCommandLine::m_AutoMultiLevels [private]

Number of levels for automatic parameter generation.

Definition at line 110 of file cmtkAffineRegistrationCommandLine.h.

const char* cmtk::AffineRegistrationCommandLine::m_InitialXformPath [private]

Path of the actual input transformation, if any.

If two input transformations are specified, i.e., one as the input studylist and one via the "--initial" command line switch, then this variable holds the path of the transformation that was actually used (the one specified with "--initial"). This is used when the optional image/transformation database is updated.

Definition at line 107 of file cmtkAffineRegistrationCommandLine.h.

Referenced by OutputResult().

const char* cmtk::AffineRegistrationCommandLine::m_OutputPathITK [private]

Name of output transformation file in ITK format.

Definition at line 131 of file cmtkAffineRegistrationCommandLine.h.

Referenced by OutputResult().

const char* cmtk::AffineRegistrationCommandLine::m_ReformattedImagePath [private]

Path for reformatted floating image.

Definition at line 113 of file cmtkAffineRegistrationCommandLine.h.

Referenced by OutputResult().

const char* cmtk::AffineRegistrationCommandLine::OutMatrixName [private]

Name of the output matrix file.