cmtkElasticRegistrationCommandLine.h

Go to the documentation of this file.

/*
//
//  Copyright 1997-2009 Torsten Rohlfing
//
//  Copyright 2004-2010 SRI International
//
//  This file is part of the Computational Morphometry Toolkit.
//
//  http://www.nitrc.org/projects/cmtk/
//
//  The Computational Morphometry Toolkit is free software: you can
//  redistribute it and/or modify it under the terms of the GNU General Public
//  License as published by the Free Software Foundation, either version 3 of
//  the License, or (at your option) any later version.
//
//  The Computational Morphometry Toolkit is distributed in the hope that it
//  will be useful, but WITHOUT ANY WARRANTY; without even the implied
//  warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
//  GNU General Public License for more details.
//
//  You should have received a copy of the GNU General Public License along
//  with the Computational Morphometry Toolkit.  If not, see
//  <http://www.gnu.org/licenses/>.
//
//  $Revision: 2752 $
//
//  $LastChangedDate: 2011-01-17 11:33:31 -0800 (Mon, 17 Jan 2011) $
//
//  $LastChangedBy: torstenrohlfing $
//
*/

#ifndef __cmtkElasticRegistrationCommandLine_h_included_
#define __cmtkElasticRegistrationCommandLine_h_included_

#include <cmtkconfig.h>

#include <Registration/cmtkElasticRegistration.h>

namespace
cmtk
{

class ElasticRegistrationCommandLine : 
  public ElasticRegistration 
{
public:
  typedef ElasticRegistrationCommandLine Self;

  typedef SmartPointer<ElasticRegistrationCommandLine> SmartPtr;

  typedef ElasticRegistration Superclass;

  ElasticRegistrationCommandLine ( const int argc, const char *argv[] );

  ~ElasticRegistrationCommandLine ();

  virtual CallbackResult Register ();

protected:
  virtual CallbackResult InitRegistration();

  virtual void OutputResult ( const CoordinateVector* );

  virtual void EnterResolution( CoordinateVector::SmartPtr&, Functional::SmartPtr&, const int, const int );

  virtual int DoneResolution( CoordinateVector::SmartPtr&, Functional::SmartPtr&, const int, const int );

private:
  const char *InputStudylist;

  const char *Studylist;

  char *Study1;

  char *Study2;
  
#ifdef CMTK_USE_SQLITE

  const char* m_UpdateDB;
#endif

  const char* RigidityConstraintMapFilename;

  const char *Protocol;

  const char *Time;

  bool Verbose;

  bool m_OutputIntermediate;

  void OutputWarp ( const char* ) const;

  const char* m_OutputPathITK;

  const char* m_ReformattedImagePath;

public:
  static Self* StaticThis;

  int IntermediateResultIndex;

  void OutputIntermediate( const bool incrementCount = true );
};


} // namespace cmtk

extern "C" void cmtkElasticRegistrationCommandLineDispatchSIGUSR1( int sig );



#endif // #ifndef __cmtkElasticRegistrationCommandLine_h_included_