cmtk::ElasticRegistrationCommandLine Class Reference [cmtkRegistration Library]

Class for command line controlled voxel registration. More...

#include <cmtkElasticRegistrationCommandLine.h>

Inheritance diagram for cmtk::ElasticRegistrationCommandLine:

Collaboration diagram for cmtk::ElasticRegistrationCommandLine:

List of all members.

Public Types
typedef ElasticRegistrationCommandLine	Self
	This class.
typedef SmartPointer < ElasticRegistrationCommandLine >	SmartPtr
	Smart pointer.
typedef ElasticRegistration	Superclass
	Parent class.
Public Member Functions
	ElasticRegistrationCommandLine (const int argc, const char *argv[])
	Constructor.
	~ElasticRegistrationCommandLine ()
	Destructor.
virtual CallbackResult	Register ()
	Perform registration.
void	OutputIntermediate (const bool incrementCount=true)
	Write intermediate deformation file.
Public Attributes
int	IntermediateResultIndex
	Counter for intermediate result files.
Static Public Attributes
static Self *	StaticThis = NULL
	Static pointer to this object.
Protected Member Functions
virtual CallbackResult	InitRegistration ()
	Initialize registration.
virtual void	OutputResult (const CoordinateVector *)
	Output registration result.
virtual void	EnterResolution (CoordinateVector::SmartPtr &, Functional::SmartPtr &, const int, const int)
	Enter resolution level.
virtual int	DoneResolution (CoordinateVector::SmartPtr &, Functional::SmartPtr &, const int, const int)
	Leave resolution level.
Private Member Functions
void	OutputWarp (const char *) const
	Write deformation to studylist archive.
Private Attributes
const char *	InputStudylist
	Name of input studylist.
const char *	Studylist
	Name of output studylist.
char *	Study1
	Name of first study to be registered.
char *	Study2
	Name of second study to be registered.
const char *	RigidityConstraintMapFilename
	Filename for rigidity constraint map.
const char *	Protocol
	Name of protocol output file.
const char *	Time
	Name of elapsed time output file.
bool	Verbose
	Verbosity flag.
bool	m_OutputIntermediate
	Select whether too create intermediate warp output files (level-xx.list).
const char *	m_OutputPathITK
	Name of output transformation file in ITK format.
const char *	m_ReformattedImagePath
	Path for reformatted floating image.

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Detailed Description

Class for command line controlled voxel registration.

Author:

T. Rohlfing

Version:

Revision:

2752

Date:

2011-01-17 11:33:31 -0800 (Mon, 17 Jan 2011)

Definition at line 50 of file cmtkElasticRegistrationCommandLine.h.

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Member Typedef Documentation

typedef ElasticRegistrationCommandLine cmtk::ElasticRegistrationCommandLine::Self

This class.

Definition at line 56 of file cmtkElasticRegistrationCommandLine.h.

typedef SmartPointer<ElasticRegistrationCommandLine> cmtk::ElasticRegistrationCommandLine::SmartPtr

Smart pointer.

Definition at line 59 of file cmtkElasticRegistrationCommandLine.h.

typedef ElasticRegistration cmtk::ElasticRegistrationCommandLine::Superclass

Parent class.

Reimplemented from cmtk::ElasticRegistration.

Definition at line 62 of file cmtkElasticRegistrationCommandLine.h.

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Member Data Documentation

const char* cmtk::ElasticRegistrationCommandLine::InputStudylist [private]

Name of input studylist.

This is defined by the --inlist command line parameter (not currently supported).

Definition at line 109 of file cmtkElasticRegistrationCommandLine.h.

int cmtk::ElasticRegistrationCommandLine::IntermediateResultIndex

Counter for intermediate result files.

Definition at line 167 of file cmtkElasticRegistrationCommandLine.h.

bool cmtk::ElasticRegistrationCommandLine::m_OutputIntermediate [private]

Select whether too create intermediate warp output files (level-xx.list).

Definition at line 151 of file cmtkElasticRegistrationCommandLine.h.

const char* cmtk::ElasticRegistrationCommandLine::m_OutputPathITK [private]

Name of output transformation file in ITK format.

Definition at line 157 of file cmtkElasticRegistrationCommandLine.h.

const char* cmtk::ElasticRegistrationCommandLine::m_ReformattedImagePath [private]

Path for reformatted floating image.

Definition at line 160 of file cmtkElasticRegistrationCommandLine.h.

const char* cmtk::ElasticRegistrationCommandLine::Protocol [private]

Name of protocol output file.

This is defined by the -p or --protocol command line option.

Definition at line 137 of file cmtkElasticRegistrationCommandLine.h.

const char* cmtk::ElasticRegistrationCommandLine::RigidityConstraintMapFilename [private]

Filename for rigidity constraint map.

Definition at line 132 of file cmtkElasticRegistrationCommandLine.h.

char* cmtk::ElasticRegistrationCommandLine::Study1 [private]

Name of first study to be registered.

This is given as the first non-option command line paramter.

Definition at line 119 of file cmtkElasticRegistrationCommandLine.h.

char* cmtk::ElasticRegistrationCommandLine::Study2 [private]

Name of second study to be registered.

This is given as the second non-option command line paramter.

Definition at line 124 of file cmtkElasticRegistrationCommandLine.h.

const char* cmtk::ElasticRegistrationCommandLine::Studylist [private]

Name of output studylist.

This is defined by the -o or --outlist command line option.

Definition at line 114 of file cmtkElasticRegistrationCommandLine.h.

const char* cmtk::ElasticRegistrationCommandLine::Time [private]

Name of elapsed time output file.

This is defined by the -t or --time command line option.

Definition at line 142 of file cmtkElasticRegistrationCommandLine.h.

bool cmtk::ElasticRegistrationCommandLine::Verbose [private]

Verbosity flag.

This is set to 'on' by -v or --verbose, and set to 'off' by -q or --quiet.

Definition at line 147 of file cmtkElasticRegistrationCommandLine.h.

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The documentation for this class was generated from the following files:

• libs/Registration/cmtkElasticRegistrationCommandLine.h
• libs/Registration/cmtkElasticRegistrationCommandLine.cxx