- s -

• SafeCounter() : cmtk::SafeCounter
• SampleCount() : cmtk::Histogram< T > , cmtk::JointHistogram< T >
• ScalarImage() : cmtk::ScalarImage
• Scale() : cmtk::ScaleHistogramValueTrait< T > , cmtk::ScaleHistogramValueTrait< int > , cmtk::ScaleHistogramValueTrait< unsigned int >
• SearchTrace() : cmtk::SearchTrace< R >
• SecondDerivApproxSpline() : cmtk::CubicSpline
• SecondDerivApproxSpline0() : cmtk::CubicSpline
• SecondDerivApproxSpline1() : cmtk::CubicSpline
• SecondDerivApproxSpline2() : cmtk::CubicSpline
• SecondDerivApproxSpline3() : cmtk::CubicSpline
• SecondDerivInterpSpline() : cmtk::CubicSpline
• SecondDerivInterpSpline0() : cmtk::CubicSpline
• SecondDerivInterpSpline1() : cmtk::CubicSpline
• SecondDerivInterpSpline2() : cmtk::CubicSpline
• SecondDerivInterpSpline3() : cmtk::CubicSpline
• Seek() : cmtk::TypedStream , cmtk::CompressedStream , cmtk::CompressedStream::ReaderBase , cmtk::CompressedStream::File , cmtk::CompressedStream::Zlib
• SegmentationLabel() : cmtk::SegmentationLabel
• Set() : cmtk::TemplateArray< T > , cmtk::TypedArray , cmtk::BitVector , cmtk::Matrix3x3< T > , cmtk::Matrix4x4< T >
• SetActive() : cmtk::Renderer
• SetActiveImagesFromTo() : cmtk::GroupwiseRegistrationFunctionalBase
• SetActiveXformsFromTo() : cmtk::GroupwiseRegistrationFunctionalBase , cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform >
• SetAdaptiveFixEntropyThreshold() : cmtk::SplineWarpMultiChannelRegistrationFunctional< TMetricFunctional >
• SetAdaptiveFixParameters() : cmtk::ImagePairSymmetricNonrigidRegistrationFunctional , cmtk::ImagePairSymmetricNonrigidRegistrationFunctionalTemplate< VM, W > , cmtk::SymmetricElasticFunctional , cmtk::SymmetricElasticFunctional_Template< VM >
• SetAdaptiveFixThreshFactor() : cmtk::ImagePairSymmetricNonrigidRegistrationFunctional , cmtk::ImagePairSymmetricNonrigidRegistrationFunctionalTemplate< VM, W > , cmtk::SplineWarpMultiChannelRegistrationFunctional< TMetricFunctional > , cmtk::SymmetricElasticFunctional , cmtk::SymmetricElasticFunctional_Template< VM >
• SetAffineXform() : cmtk::VolumeWrapper , cmtk::ReformatVolume
• SetAll() : cmtk::Matrix2D< T > , cmtk::Matrix3D< T > , cmtk::Vector< T >
• SetAllToZero() : cmtk::Matrix2D< T > , cmtk::Matrix3D< T >
• SetAlphaChannel() : cmtk::ImageRGB
• SetAngles() : cmtk::AffineXform
• SetAttribute() : cmtk::CommandLine::Item
• SetBiasFieldAdd() : cmtk::EntropyMinimizationIntensityCorrectionFunctionalBase
• SetBiasFieldMul() : cmtk::EntropyMinimizationIntensityCorrectionFunctionalBase
• SetCenter() : cmtk::AffineXform
• SetClippingBoundaries() : cmtk::VolumeClipping
• SetColormap() : cmtk::ImageToImageRGB
• SetConstraintWeightLNorm() : cmtk::InverseInterpolationVolumeReconstructionBase
• SetCropImageHistograms() : cmtk::GroupwiseRegistrationFunctionalXformTemplateBase< TXform >
• SetCropRegion() : cmtk::DataGrid , cmtk::UniformVolume
• SetData() : cmtk::TemplateArray< T > , cmtk::TypedArray , cmtk::Image
• SetDataAt() : cmtk::DataGrid , cmtk::Image
• SetDatabasePath() : cmtk::RegistrationDatabaseUpdater
• SetDataX() : cmtk::VoxelMatchingMetric_Type< T, DT >
• SetDataXY() : cmtk::VoxelMatchingMetric_Type< T, DT >
• SetDataY() : cmtk::VoxelMatchingMetric_Type< T, DT >
• SetDeactivateUninformativeMode() : cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform >
• SetDebugFlag() : cmtk::TypedStream
• SetDefaultInfo() : cmtk::CommandLine
• SetDeltaFThreshold() : cmtk::Optimizer
• SetDeltaX() : cmtk::VolumeClipping
• SetDeltaY() : cmtk::VolumeClipping
• SetDeltaZ() : cmtk::VolumeClipping
• SetDim() : cmtk::Vector< T >
• SetDims() : cmtk::DataGrid , cmtk::ScalarImage
• SetEpsilon() : cmtk::XformList
• SetExistingTemplatePath() : cmtk::GroupwiseRegistrationOutput
• SetExitCode() : cmtk::StackBacktrace
• SetFast() : cmtk::AtlasSegmentation
• SetFilterSigma() : cmtk::SimpleLevelset
• SetFinalValue() : cmtk::OptimizerBase
• SetFixOffset() : cmtk::ImageSymmetryPlaneFunctionalBase
• SetFloatingVolume() : cmtk::ImagePairSimilarityJointHistogram , cmtk::ImagePairSimilarityMeasure , cmtk::ReformatVolume
• SetFltImage() : cmtk::FunctionalAffine2D
• SetFltImages() : cmtk::FunctionalAffine2D
• SetForceOutside() : cmtk::ElasticRegistration , cmtk::ImagePairNonrigidRegistrationFunctionalTemplate< VM > , cmtk::ImagePairRegistration , cmtk::ImagePairRegistrationFunctional , cmtk::VoxelMatchingElasticFunctional , cmtk::VoxelMatchingElasticFunctional_Template< VM >
• SetForceZeroSum() : cmtk::GroupwiseRegistrationFunctionalBase
• SetForceZeroSumFirstN() : cmtk::GroupwiseRegistrationFunctionalBase
• SetForceZeroSumNoAffine() : cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform >
• SetForegroundMask() : cmtk::EntropyMinimizationIntensityCorrectionFunctionalDevice< NOrderAdd, NOrderMul > , cmtk::EntropyMinimizationIntensityCorrectionFunctionalBase
• SetFreeAndRereadImages() : cmtk::GroupwiseRegistrationFunctionalBase
• SetFromLabelMap() : cmtk::Study
• SetFromScalarImage() : cmtk::Image
• SetFromStudy() : cmtk::Colormap
• SetFunctional() : cmtk::GroupwiseRegistrationOutput
• SetGaussianSmoothImagesSigma() : cmtk::GroupwiseRegistrationFunctionalBase
• SetGridEnergyWeight() : cmtk::ImagePairSymmetricNonrigidRegistrationFunctional , cmtk::ImagePairSymmetricNonrigidRegistrationFunctionalTemplate< VM, W > , cmtk::SymmetricElasticFunctional , cmtk::SymmetricElasticFunctional_Template< VM >
• SetHighResCropRegion() : cmtk::UniformVolume
• SetImageOrigin() : cmtk::ScalarImage
• SetInactive() : cmtk::Renderer
• SetInitialAffineTransformation() : cmtk::SplineWarpMultiChannelRegistrationFunctional< TMetricFunctional >
• SetInput() : cmtk::Filter< I, O > , cmtk::ImageToImageRGB , cmtk::PlaneSource , cmtk::Renderer , cmtk::ArrayFilter< I, O, InputDim > , cmtk::Drain< I >
• SetInputImage() : cmtk::EntropyMinimizationIntensityCorrectionFunctionalDevice< NOrderAdd, NOrderMul > , cmtk::EntropyMinimizationIntensityCorrectionFunctionalBase
• SetInputXformPath() : cmtk::RegistrationDatabaseUpdater
• SetInterpolation() : cmtk::ReformatVolume
• SetInverseConsistencyWeight() : cmtk::ImagePairNonrigidRegistrationFunctional , cmtk::ImagePairSymmetricNonrigidRegistrationFunctional , cmtk::ImagePairSymmetricNonrigidRegistrationFunctionalTemplate< VM, W > , cmtk::SymmetricElasticFunctional , cmtk::SymmetricElasticFunctional_Template< VM > , cmtk::VoxelMatchingElasticFunctional_WarpTemplate< W >
• SetInverseTransformation() : cmtk::ImagePairNonrigidRegistrationFunctional , cmtk::VoxelMatchingElasticFunctional_WarpTemplate< W >
• SetJacobianConstraintWeight() : cmtk::ImagePairSymmetricNonrigidRegistrationFunctional , cmtk::ImagePairSymmetricNonrigidRegistrationFunctionalTemplate< VM, W > , cmtk::SplineWarpMultiChannelRegistrationFunctional< TMetricFunctional > , cmtk::SymmetricElasticFunctional , cmtk::SymmetricElasticFunctional_Template< VM >
• SetLevelsetThreshold() : cmtk::SimpleLevelset
• SetMakeName() : cmtk::Study
• SetMatrix() : cmtk::AffineXform
• SetMatrixDirect() : cmtk::AffineXform
• SetMaxNumBins() : cmtk::TypedArraySimilarityMemory
• SetMetaInfo() : cmtk::MetaInformationObject
• SetMinNumBins() : cmtk::TypedArraySimilarityMemory
• SetNormal() : cmtk::ParametricPlane
• SetNormalizedMI() : cmtk::MultiChannelRegistrationFunctionalBase
• SetNumberDOFs() : cmtk::AffineXform , cmtk::TemplateMultiChannelRegistrationFunctional< TXform, TMetricFunctional >
• SetNumberOfBins() : cmtk::FunctionalAffine2D
• SetNumberOfHistogramBins() : cmtk::CongealingFunctional< TXform > , cmtk::GroupwiseRegistrationFunctionalXformTemplateBase< TXform > , cmtk::EntropyMinimizationIntensityCorrectionFunctionalBase
• SetOffset() : cmtk::Volume
• SetOptimizer() : cmtk::MultiLevelOptimizer
• SetOrthoSlice() : cmtk::DataGrid
• SetOutputRootDirectory() : cmtk::GroupwiseRegistrationOutput
• SetOutputXform() : cmtk::RegistrationDatabaseUpdater
• SetPaddingAt() : cmtk::TemplateArray< T > , cmtk::TypedArray
• SetPaddingPtr() : cmtk::TemplateArray< T > , cmtk::TypedArray
• SetPaddingValue() : cmtk::TemplateArray< T > , cmtk::TypedArray , cmtk::ReformatVolume::Plain
• SetPaddingValueTemplate() : cmtk::TemplateArray< T >
• SetParameter() : cmtk::AffineXform , cmtk::Xform , cmtk::GroupwiseRegistrationFunctionalBase
• SetParameterActive() : cmtk::WarpXform
• SetParameterInactive() : cmtk::WarpXform
• SetParameters() : cmtk::ParametricPlane
• SetParametersActive() : cmtk::WarpXform
• SetParamVector() : cmtk::AffineXform , cmtk::Functional , cmtk::Xform , cmtk::FunctionalAffine2D , cmtk::GroupwiseRegistrationFunctionalBase , cmtk::TemplateMultiChannelRegistrationFunctional< TXform, TMetricFunctional > , cmtk::EntropyMinimizationIntensityCorrectionFunctional< NOrderAdd, NOrderMul >
• SetPartialGradientMode() : cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform >
• SetPassWeight() : cmtk::VolumeInjectionReconstruction
• SetPhi() : cmtk::ParametricPlane
• SetPixel() : cmtk::ImageRGB
• SetPixelAt() : cmtk::ScalarImage
• SetPlane() : cmtk::Slicer
• SetProbabilisticSampleDensity() : cmtk::GroupwiseRegistrationFunctionalBase
• SetProbabilisticSampleUpdatesAfter() : cmtk::GroupwiseRegistrationFunctionalBase
• SetProgramInfo() : cmtk::CommandLine
• SetProgress() : cmtk::Progress
• SetProgressBar() : cmtk::QtProgress
• SetProgressCurrent() : cmtk::Progress
• SetProgressInstance() : cmtk::Progress
• SetProgressWidgetMode() : cmtk::QtProgress
• SetProperties() : cmtk::CommandLine::Item , cmtk::CommandLine::KeyToAction , cmtk::CommandLine::KeyActionGroupType
• SetRange() : cmtk::HistogramBase
• SetRangeCentered() : cmtk::HistogramBase
• SetRangeCenteredX() : cmtk::JointHistogram< T >
• SetRangeCenteredY() : cmtk::JointHistogram< T >
• SetRangeX() : cmtk::JointHistogram< T >
• SetRangeY() : cmtk::JointHistogram< T >
• SetReferenceCount() : cmtk::Object
• SetReferenceImage() : cmtk::VolumeInjectionReconstruction
• SetReferenceVolume() : cmtk::ImagePairSimilarityJointHistogram , cmtk::ImagePairSimilarityMeasure , cmtk::ReformatVolume
• SetRefImage() : cmtk::FunctionalAffine2D
• SetRefImages() : cmtk::FunctionalAffine2D
• SetRepeatIntensityHistogramMatching() : cmtk::GroupwiseRegistrationFunctionalBase
• SetRho() : cmtk::ParametricPlane
• SetRigidityConstraintWeight() : cmtk::SymmetricElasticFunctional , cmtk::SymmetricElasticFunctional_Template< VM >
• SetROI() : cmtk::ScalarImage
• SetSamplingDensity() : cmtk::EntropyMinimizationIntensityCorrectionFunctionalBase
• SetScaleInitialSphere() : cmtk::SimpleLevelset
• SetScales() : cmtk::AffineXform
• SetShears() : cmtk::AffineXform
• SetShiftedControlPointPositionByOffset() : cmtk::WarpXform
• SetSliderLabelL() : cmtk::QtScrollRenderView
• SetSliderLabelR() : cmtk::QtScrollRenderView
• SetStandardColormap() : cmtk::Colormap
• SetTargetImages() : cmtk::GroupwiseRegistrationFunctionalBase
• SetTemplateGrid() : cmtk::SplineWarpCongealingFunctional , cmtk::CongealingFunctional< TXform > , cmtk::GroupwiseRegistrationFunctionalBase , cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > , cmtk::GroupwiseRegistrationRMIFunctional< TXform >
• SetTheta() : cmtk::ParametricPlane
• SetTimeDelta() : cmtk::SimpleLevelset
• SetToZero() : cmtk::DeviceMemory< T, DeviceMemoryGPU >
• SetTransformationsToPassImages() : cmtk::VolumeInjectionReconstruction
• SetupHistogramKernels() : cmtk::VolumeInjectionReconstruction
• SetUseFourthOrderError() : cmtk::InverseInterpolationVolumeReconstructionBase
• SetUseLogIntensities() : cmtk::EntropyMinimizationIntensityCorrectionFunctionalBase
• SetUseLogScaleFactors() : cmtk::AffineXform
• SetUserBackgroundValue() : cmtk::GroupwiseRegistrationFunctionalBase
• SetUserDataType() : cmtk::ReformatVolume
• SetUseRegionalIntensityTruncation() : cmtk::InverseInterpolationVolumeReconstructionBase
• SetVerbose() : cmtk::AtlasSegmentation
• SetVolume() : cmtk::UniformVolumeInterpolatorBase , cmtk::VolumeWrapper , cmtk::SymmetryPlaneFunctional
• SetWarpXform() : cmtk::ImagePairNonrigidRegistrationFunctional , cmtk::ImagePairNonrigidRegistrationFunctionalTemplate< VM > , cmtk::ImagePairSymmetricNonrigidRegistrationFunctional , cmtk::ParallelElasticFunctional< VM > , cmtk::ReformatVolume , cmtk::SymmetricElasticFunctional , cmtk::SymmetricElasticFunctional_Template< VM > , cmtk::VoxelMatchingElasticFunctional , cmtk::VoxelMatchingElasticFunctional_WarpTemplate< W > , cmtk::ImagePairSymmetricNonrigidRegistrationFunctionalTemplate< VM, W > , cmtk::VolumeWrapper
• SetWriteCompressedOff() : cmtk::VolumeIO
• SetWriteCompressedOn() : cmtk::VolumeIO
• SetXformNumberDOFs() : cmtk::GroupwiseRegistrationFunctionalXformTemplate< AffineXform >
• SetXforms() : cmtk::GroupwiseRegistrationFunctionalBase , cmtk::GroupwiseRegistrationFunctionalXformTemplate< AffineXform >
• SetXlate() : cmtk::AffineXform
• ShowSlider() : cmtk::QtScrollRenderView
• Sign() : cmtk::MathUtil
• Signal() : cmtk::ConditionVariable
• signalMouse3D() : cmtk::QtRenderImageRGB , cmtk::QtScrollRenderView
• signalMousePressed() : cmtk::QtRenderImageRGB , cmtk::QtScrollRenderView
• SijbersBiasHat() : cmtk::TypedArrayNoiseEstimatorBrummer
• SijbersLogLikelihood() : cmtk::TypedArrayNoiseEstimatorBrummer
• SijbersVarHat() : cmtk::TypedArrayNoiseEstimatorBrummer
• SimpleLevelset() : cmtk::SimpleLevelset
• SimpleLevelsetCommandLineBase() : cmtk::SimpleLevelsetCommandLineBase
• SimpleLevelsetDevice() : cmtk::SimpleLevelsetDevice
• Sin() : cmtk::MathUtil
• Size() : cmtk::Region< NDIM, T >
• Slicer() : cmtk::Slicer
• slotAddLandmark() : cmtk::QtTriplanarWindow
• slotAddStudy() : cmtk::QtTriplanarViewer
• slotCenter() : cmtk::QtTriplanarWindow , cmtk::QtSliderEntry
• slotColormapChanged() : cmtk::QtTriplanarWindow
• slotConnectImage() : cmtk::QtScrollRenderView
• slotControlsChanged() : cmtk::QtWindowLevelControls
• slotCopyColormapToOtherImages() : cmtk::QtTriplanarViewer
• slotDataChanged() : cmtk::QtTriplanarWindow
• slotDeleteLandmark() : cmtk::QtTriplanarWindow
• slotEditReturnPressed() : cmtk::QtSliderEntry
• slotExportImage() : cmtk::QtTriplanarWindow
• slotExportLandmarks() : cmtk::QtTriplanarWindow
• slotExportMenuCmd() : cmtk::QtTriplanarWindow
• slotGoToLandmark() : cmtk::QtTriplanarWindow
• slotGoToLocation() : cmtk::QtTriplanarWindow
• slotGoToPixel() : cmtk::QtTriplanarWindow
• slotImportLandmarks() : cmtk::QtTriplanarWindow
• slotLoadFile() : cmtk::QtTriplanarViewer
• slotMouse3D() : cmtk::QtTriplanarWindow
• slotMouseAx() : cmtk::QtTriplanarWindow
• slotMouseCo() : cmtk::QtTriplanarWindow
• slotMouseSa() : cmtk::QtTriplanarWindow
• slotOperatorAbs() : cmtk::QtImageOperators
• slotOperatorExp() : cmtk::QtImageOperators
• slotOperatorHistEq() : cmtk::QtImageOperators
• slotOperatorLog() : cmtk::QtImageOperators
• slotOperatorMedian() : cmtk::QtImageOperators
• slotOperatorSobel() : cmtk::QtImageOperators
• slotReloadData() : cmtk::QtTriplanarViewer
• slotRender() : cmtk::QtScrollRenderView
• slotRenderAll() : cmtk::QtTriplanarWindow
• slotSelectColormap() : cmtk::QtWindowLevelControls
• slotSetCheckerboardMode() : cmtk::QtTriplanarWindow
• slotSetColormap() : cmtk::QtTriplanarWindow
• slotSetCrosshairMode() : cmtk::QtTriplanarWindow
• slotSetInterpolateMode() : cmtk::QtTriplanarWindow
• slotSetMinMaxLabels() : cmtk::QtSliderEntry
• slotSetNumberOfSlices() : cmtk::QtScrollRenderView
• slotSetPrecision() : cmtk::QtSliderEntry
• slotSetRange() : cmtk::QtSliderEntry
• slotSetSlice() : cmtk::QtScrollRenderView
• slotSetStudy() : cmtk::QtWindowLevelDialog , cmtk::QtWindowLevelControls
• slotSetTitle() : cmtk::QtSliderEntry
• slotSetValue() : cmtk::QtSliderEntry
• slotSetWindowLevel() : cmtk::QtTriplanarWindow
• slotSetZoom() : cmtk::QtTriplanarWindow
• slotSliderValueChanged() : cmtk::QtSliderEntry
• slotSwitchImageAx() : cmtk::QtTriplanarWindow
• slotSwitchImageCo() : cmtk::QtTriplanarWindow
• slotSwitchImageSa() : cmtk::QtTriplanarWindow
• slotSwitchModeWL() : cmtk::QtWindowLevelControls
• slotSwitchStudy() : cmtk::QtTriplanarViewer
• slotSwitchToStudy() : cmtk::QtTriplanarWindow
• slotSwitchToStudyInternal() : cmtk::QtTriplanarWindow
• slotView100() : cmtk::QtTriplanarWindow
• slotView200() : cmtk::QtTriplanarWindow
• slotView25() : cmtk::QtTriplanarWindow
• slotView300() : cmtk::QtTriplanarWindow
• slotView33() : cmtk::QtTriplanarWindow
• slotView400() : cmtk::QtTriplanarWindow
• slotView50() : cmtk::QtTriplanarWindow
• slotView500() : cmtk::QtTriplanarWindow
• slotViewCheckerbox() : cmtk::QtTriplanarWindow
• slotViewCrosshair() : cmtk::QtTriplanarWindow
• slotViewInterpolation() : cmtk::QtTriplanarWindow
• SmartConstPointer() : cmtk::SmartConstPointer< T >
• SmartPointer() : cmtk::SmartPointer< T >
• Sort() : cmtk::Vector< T >
• Source() : cmtk::Source< O >
• SplineWarpGroupwiseRegistrationRMIFunctional() : cmtk::SplineWarpGroupwiseRegistrationRMIFunctional
• SplineWarpMultiChannelRegistrationFunctional() : cmtk::SplineWarpMultiChannelRegistrationFunctional< TMetricFunctional >
• SplineWarpXform() : cmtk::SplineWarpXform
• SplineWarpXformUniformVolume() : cmtk::SplineWarpXformUniformVolume
• SQLite() : cmtk::SQLite
• Square() : cmtk::MathUtil
• StackBacktrace() : cmtk::StackBacktrace
• StartThreads() : cmtk::ThreadPool
• Stat() : cmtk::CompressedStream
• StoreField() : cmtk::FileHeader
• StoreFieldString() : cmtk::FileHeader
• StringCmp() : cmtk::TypedStream
• StringSplit() : cmtk::TypedStream
• StudholmeFilter() : cmtk::FilterVolume
• Study() : cmtk::Study
• StudyDataValid() : cmtk::QtImageOperators
• StudyImageSet() : cmtk::StudyImageSet
• StudyList() : cmtk::StudyList
• Sum() : cmtk::Accumulators::Sum< TDataType > , cmtk::FixedVector< NDIM, T >
• SumOfSquares() : cmtk::FixedVector< NDIM, T >
• SurfaceNormal() : cmtk::SurfaceNormal
• SVD() : cmtk::MathUtil
• SVDLinearRegression() : cmtk::MathUtil
• Switch() : cmtk::CommandLine::Switch< T >
• SymmetricElasticFunctional_Template() : cmtk::SymmetricElasticFunctional_Template< VM >
• SymmetryPlaneFunctional() : cmtk::SymmetryPlaneFunctional