Here is a list of all class members with links to the classes they belong to:

- s -

• SafeCounter() : cmtk::SafeCounter
• SampleCount() : cmtk::Histogram< T > , cmtk::JointHistogram< T >
• Samples : cmtk::ImagePairSimilarityMeasureNCC , cmtk::VoxelMatchingCrossCorrelation , cmtk::VoxelMatchingMeanSquaredDifference
• ScalarImage() : cmtk::ScalarImage
• Scale() : cmtk::ScaleHistogramValueTrait< T > , cmtk::ScaleHistogramValueTrait< int > , cmtk::ScaleHistogramValueTrait< unsigned int >
• SCANDIRECTION_CAUDAL_CRANIAL : cmtk::PlaneSource
• SCANDIRECTION_CRANIAL_CAUDAL : cmtk::PlaneSource
• SCANDIRECTION_DORSAL_VENTRAL : cmtk::PlaneSource
• SCANDIRECTION_LEFT_RIGHT : cmtk::PlaneSource
• SCANDIRECTION_RIGHT_LEFT : cmtk::PlaneSource
• SCANDIRECTION_VENTRAL_DORSAL : cmtk::PlaneSource
• ScandirectionEnum : cmtk::PlaneSource
• ScrollRenderViewAx : cmtk::QtTriplanarWindow
• ScrollRenderViewCo : cmtk::QtTriplanarWindow
• ScrollRenderViewSa : cmtk::QtTriplanarWindow
• ScrollView : cmtk::QtScrollRenderView
• SearchTrace() : cmtk::SearchTrace< R >
• SecondDerivApproxSpline() : cmtk::CubicSpline
• SecondDerivApproxSpline0() : cmtk::CubicSpline
• SecondDerivApproxSpline1() : cmtk::CubicSpline
• SecondDerivApproxSpline2() : cmtk::CubicSpline
• SecondDerivApproxSpline3() : cmtk::CubicSpline
• SecondDerivInterpSpline() : cmtk::CubicSpline
• SecondDerivInterpSpline0() : cmtk::CubicSpline
• SecondDerivInterpSpline1() : cmtk::CubicSpline
• SecondDerivInterpSpline2() : cmtk::CubicSpline
• SecondDerivInterpSpline3() : cmtk::CubicSpline
• Seek() : cmtk::TypedStream , cmtk::CompressedStream , cmtk::CompressedStream::ReaderBase , cmtk::CompressedStream::File , cmtk::CompressedStream::Zlib
• SeekBlockSize : cmtk::CompressedStream::ReaderBase
• SegmentationLabel() : cmtk::SegmentationLabel
• Self : cmtk::GeneralLinearModel , cmtk::EntropyMinimizationIntensityCorrectionFunctionalDevice< NOrderAdd, NOrderMul > , cmtk::ImagePairAffineRegistrationFunctionalDevice , cmtk::Histogram< T > , cmtk::ImageSymmetryPlaneFunctionalDevice , cmtk::SimpleLevelsetDevice , cmtk::HistogramBase , cmtk::AffineXformITKIO , cmtk::ImageOperationApplyMask , cmtk::ImageInterpolator< TImageType, TInterpolationFunction > , cmtk::SQLite , cmtk::StudyList , cmtk::ImageOperation , cmtk::VolumeIO , cmtk::XformIO , cmtk::ImageOperationReplace , cmtk::XformListIO , cmtk::QGraphicsPixmapItemEvents , cmtk::ImageTemplate< TPixelType > , cmtk::QtProgress , cmtk::DeblurringVolumeReconstruction< TPSF > , cmtk::JointHistogram< T > , cmtk::InverseInterpolationVolumeReconstruction< TInterpolator > , cmtk::InverseInterpolationVolumeReconstructionBase , cmtk::JointHistogramBase , cmtk::PointSpreadFunctions::Box , cmtk::PointSpreadFunctions::Gaussian , cmtk::LandmarkList , cmtk::VolumeInjectionReconstruction , cmtk::AffineMultiChannelRegistrationFunctional< TMultiChannelMetricFunctional > , cmtk::LogHistogram< T > , cmtk::AffineRegistrationCommandLine , cmtk::BestDirectionOptimizer , cmtk::MatchedLandmark , cmtk::BestNeighbourOptimizer , cmtk::CongealingFunctional< TXform > , cmtk::MatchedLandmarkList , cmtk::ElasticRegistrationCommandLine , cmtk::FunctionalAffine2D , cmtk::MathUtil , cmtk::GroupwiseRegistrationFunctionalAffineInitializer , cmtk::GroupwiseRegistrationFunctionalBase , cmtk::Matrix< TElement, NDim > , cmtk::GroupwiseRegistrationFunctionalXformTemplate< TXform > , cmtk::GroupwiseRegistrationFunctionalXformTemplate< AffineXform > , cmtk::Matrix2D< T > , cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > , cmtk::GroupwiseRegistrationFunctionalXformTemplateBase< TXform > , cmtk::Matrix3D< T > , cmtk::GroupwiseRegistrationRMIFunctional< TXform > , cmtk::ImagePairAffineRegistration , cmtk::Matrix3x3< T > , cmtk::ImagePairAffineRegistrationCommandLine , cmtk::ImagePairAffineRegistrationFunctional , cmtk::Matrix4x4< T > , cmtk::ImagePairAffineRegistrationFunctionalTemplate< VM > , cmtk::ImagePairNonrigidRegistration , cmtk::ParametricPlane , cmtk::ImagePairNonrigidRegistrationCommandLine , cmtk::ImagePairNonrigidRegistrationFunctional , cmtk::Polynomial< NDegree, TRealType > , cmtk::ImagePairNonrigidRegistrationFunctionalTemplate< VM > , cmtk::ImagePairRegistration , cmtk::Polynomial< 0, TRealType > , cmtk::ImagePairRegistration::LevelParameters , cmtk::ImagePairRegistrationFunctional , cmtk::AffineXform , cmtk::Polynomial< 1, TRealType > , cmtk::ImagePairSimilarityJointHistogram , cmtk::ImagePairSimilarityMeasure , cmtk::Polynomial< 2, TRealType > , cmtk::ImagePairSimilarityMeasureCR , cmtk::ImagePairSimilarityMeasureMI , cmtk::AffineXformUniformVolume , cmtk::Polynomial< 3, TRealType > , cmtk::ImagePairSimilarityMeasureMSD , cmtk::ImagePairSimilarityMeasureNCC , cmtk::Polynomial< 4, TRealType > , cmtk::ImagePairSimilarityMeasureNMI , cmtk::ImagePairSimilarityMeasureRMS , cmtk::AnatomicalOrientation , cmtk::Region< NDIM, T > , cmtk::ImagePairSymmetricNonrigidRegistrationFunctional , cmtk::ImagePairSymmetricNonrigidRegistrationFunctionalTemplate< VM, W > , cmtk::RegionIndexIterator< NDIM, T > , cmtk::ImageSymmetryPlaneCommandLine< TFunctional > , cmtk::ImageSymmetryPlaneFunctional , cmtk::AnatomicalOrientation::PermutationMatrix , cmtk::ScalarImage , cmtk::ImageSymmetryPlaneFunctionalBase , cmtk::ImageXformDB , cmtk::Interpolators::HammingSinc< NRadius > , cmtk::MakeInitialAffineTransformation , cmtk::MultiChannelHistogramRegistrationFunctional< TDataType, TInterpolator, THashKeyType, NBitsPerChannel > , cmtk::AnatomicalOrientationBase , cmtk::Interpolators::CosineSinc< NRadius > , cmtk::MultiChannelHistogramRegistrationFunctional< TDataType, TInterpolator, THashKeyType, NBitsPerChannel >::MetricData , cmtk::MultiChannelRegistrationFunctional< TInterpolator > , cmtk::SplineWarpXform , cmtk::MultiChannelRegistrationFunctionalBase , cmtk::MultiChannelRMIRegistrationFunctional< TRealType, TDataType, TInterpolator > , cmtk::DataGrid , cmtk::SplineWarpXformUniformVolume , cmtk::MultiChannelRMIRegistrationFunctional< TRealType, TDataType, TInterpolator >::MetricData , cmtk::MultiLevelOptimizer::FunctionalWithStepSizes , cmtk::SurfaceNormal , cmtk::Optimizer , cmtk::OptimizerBase , cmtk::DataGridFilter , cmtk::TemplateArray< T > , cmtk::ParallelElasticFunctional< VM > , cmtk::ReformatVolume , cmtk::TransformedVolumeAxes , cmtk::RegistrationJointHistogram< I > , cmtk::SplineWarpCongealingFunctional , cmtk::DataGridMorphologicalOperators , cmtk::TypedArray , cmtk::SplineWarpGroupwiseRegistrationRMIFunctional , cmtk::SplineWarpMultiChannelIntensityCorrectionRegistrationFunctional< TMetricFunctional > , cmtk::TypedArrayFunctionHistogramEqualization , cmtk::SplineWarpMultiChannelRegistrationFunctional< TMetricFunctional > , cmtk::SymmetricElasticFunctional , cmtk::DataTypeTraits< float > , cmtk::TypedArrayFunctionHistogramMatching , cmtk::SymmetricElasticFunctional_Template< VM > , cmtk::SymmetryPlaneFunctional , cmtk::TypedArrayNoiseEstimatorNaiveGaussian , cmtk::TemplateMultiChannelRegistrationFunctional< TXform, TMetricFunctional > , cmtk::VoxelMatchingAffineFunctional , cmtk::DataTypeTraits< double > , cmtk::UniformDistanceMap< TDistanceDataType > , cmtk::VoxelMatchingAffineFunctionalTemplate< VM > , cmtk::VoxelMatchingCorrRatio< I > , cmtk::UniformVolume , cmtk::VoxelMatchingCrossCorrelation , cmtk::VoxelMatchingElasticFunctional , cmtk::DataTypeTraits< byte > , cmtk::UniformVolumeFilter , cmtk::VoxelMatchingElasticFunctional_WarpTemplate< W > , cmtk::VoxelMatchingElasticFunctional_Template< VM > , cmtk::UniformVolumeInterpolator< TInterpolationFunction > , cmtk::VoxelMatchingFunctional , cmtk::VoxelMatchingMeanSquaredDifference , cmtk::DataTypeTraits< char > , cmtk::UniformVolumeInterpolatorBase , cmtk::VoxelMatchingMetric< T, DT, I > , cmtk::VoxelMatchingMetric_Type< T, DT > , cmtk::UniformVolumeInterpolatorPartialVolume , cmtk::VoxelMatchingMutInf< I > , cmtk::VoxelMatchingNormMutInf< I > , cmtk::DataTypeTraits< signed short > , cmtk::UniformVolumePainter , cmtk::EntropyMinimizationIntensityCorrectionFunctional< NOrderAdd, NOrderMul > , cmtk::EntropyMinimizationIntensityCorrectionFunctionalBase , cmtk::ValueSequence< T > , cmtk::LabelCombinationMultiClassSTAPLE , cmtk::SimpleLevelsetCommandLine< TImpl > , cmtk::DataTypeTraits< unsigned short > , cmtk::Vector< T > , cmtk::SimpleLevelsetCommandLineBase , cmtk::CommandLine , cmtk::Volume , cmtk::CommandLine::NonOptionParameter , cmtk::CommandLine::NonOptionParameterVector , cmtk::DataTypeTraits< int > , cmtk::WarpXform , cmtk::CompressedStream , cmtk::CompressedStream::ReaderBase , cmtk::Xform , cmtk::CompressedStream::File , cmtk::CompressedStream::Pipe , cmtk::DeformationField , cmtk::XformList , cmtk::CompressedStream::Zlib , cmtk::Progress , cmtk::XformListEntry , cmtk::ProgressConsole , cmtk::SmartConstPointer< T > , cmtk::FilterMaskPixel< DIM > , cmtk::XformUniformVolume , cmtk::SmartPointer< T > , cmtk::StackBacktrace , cmtk::DeviceArrayTemplate< DeviceArrayGPU > , cmtk::ThreadPool , cmtk::TypedArrayNoiseEstimatorBrummer , cmtk::FilterMask< DIM > , cmtk::DeviceArrayCUDA , cmtk::TypedArrayNoiseEstimatorMaximumLikelihood , cmtk::DeviceContextCL , cmtk::FixedVector< NDIM, T > , cmtk::DeviceHistogram , cmtk::DeviceMemory< T, DeviceMemoryGPU > , cmtk::Functional , cmtk::DeviceMemoryCL , cmtk::DeviceMemoryCUDA , cmtk::GaussianKernel< TFloat > , cmtk::DeviceUniformVolume , cmtk::DeviceUniformVolumeArray
• Self::FunctionAndGradient : cmtk::DeblurringVolumeReconstruction< TPSF > , cmtk::InverseInterpolationVolumeReconstruction< TInterpolator >
• Set() : cmtk::BitVector , cmtk::Matrix3x3< T > , cmtk::Matrix4x4< T > , cmtk::TemplateArray< T > , cmtk::TypedArray
• SetActive() : cmtk::Renderer
• SetActiveImagesFromTo() : cmtk::GroupwiseRegistrationFunctionalBase
• SetActiveXformsFromTo() : cmtk::GroupwiseRegistrationFunctionalBase , cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform >
• SetAdaptiveFixEntropyThreshold() : cmtk::SplineWarpMultiChannelRegistrationFunctional< TMetricFunctional >
• SetAdaptiveFixParameters() : cmtk::SymmetricElasticFunctional , cmtk::SymmetricElasticFunctional_Template< VM > , cmtk::ImagePairSymmetricNonrigidRegistrationFunctional , cmtk::ImagePairSymmetricNonrigidRegistrationFunctionalTemplate< VM, W >
• SetAdaptiveFixThreshFactor() : cmtk::ImagePairSymmetricNonrigidRegistrationFunctional , cmtk::ImagePairSymmetricNonrigidRegistrationFunctionalTemplate< VM, W > , cmtk::SplineWarpMultiChannelRegistrationFunctional< TMetricFunctional > , cmtk::SymmetricElasticFunctional , cmtk::SymmetricElasticFunctional_Template< VM >
• SetAffineXform() : cmtk::VolumeWrapper , cmtk::ReformatVolume
• SetAll() : cmtk::Matrix2D< T > , cmtk::Matrix3D< T > , cmtk::Vector< T >
• SetAllToZero() : cmtk::Matrix2D< T > , cmtk::Matrix3D< T >
• SetAlphaChannel() : cmtk::ImageRGB
• SetAngles() : cmtk::AffineXform
• SetAttribute() : cmtk::CommandLine::Item
• SetBiasFieldAdd() : cmtk::EntropyMinimizationIntensityCorrectionFunctionalBase
• SetBiasFieldMul() : cmtk::EntropyMinimizationIntensityCorrectionFunctionalBase
• SetCenter() : cmtk::AffineXform
• SetClippingBoundaries() : cmtk::VolumeClipping
• SetColormap() : cmtk::ImageToImageRGB
• SetConstraintWeightLNorm() : cmtk::InverseInterpolationVolumeReconstructionBase
• SetCropImageHistograms() : cmtk::GroupwiseRegistrationFunctionalXformTemplateBase< TXform >
• SetCropRegion() : cmtk::DataGrid , cmtk::UniformVolume
• SetData() : cmtk::TemplateArray< T > , cmtk::TypedArray , cmtk::Image
• SetDataAt() : cmtk::DataGrid , cmtk::Image
• SetDatabasePath() : cmtk::RegistrationDatabaseUpdater
• SetDataX() : cmtk::VoxelMatchingMetric_Type< T, DT >
• SetDataXY() : cmtk::VoxelMatchingMetric_Type< T, DT >
• SetDataY() : cmtk::VoxelMatchingMetric_Type< T, DT >
• SetDeactivateUninformativeMode() : cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform >
• SetDebugFlag() : cmtk::TypedStream
• SetDefaultInfo() : cmtk::CommandLine
• SetDeltaFThreshold() : cmtk::Optimizer
• SetDeltaX() : cmtk::VolumeClipping
• SetDeltaY() : cmtk::VolumeClipping
• SetDeltaZ() : cmtk::VolumeClipping
• SetDim() : cmtk::Vector< T >
• SetDims() : cmtk::DataGrid , cmtk::ScalarImage
• SetEpsilon() : cmtk::XformList
• SetExistingTemplatePath() : cmtk::GroupwiseRegistrationOutput
• SetExitCode() : cmtk::StackBacktrace
• SetFast() : cmtk::AtlasSegmentation
• SetFilterSigma() : cmtk::SimpleLevelset
• SetFinalValue() : cmtk::OptimizerBase
• SetFixOffset() : cmtk::ImageSymmetryPlaneFunctionalBase
• SetFloatingVolume() : cmtk::ImagePairSimilarityJointHistogram , cmtk::ImagePairSimilarityMeasure , cmtk::ReformatVolume
• SetFltImage() : cmtk::FunctionalAffine2D
• SetFltImages() : cmtk::FunctionalAffine2D
• SetForceOutside() : cmtk::ElasticRegistration , cmtk::ImagePairNonrigidRegistrationFunctionalTemplate< VM > , cmtk::ImagePairRegistration , cmtk::ImagePairRegistrationFunctional , cmtk::VoxelMatchingElasticFunctional , cmtk::VoxelMatchingElasticFunctional_Template< VM >
• SetForceZeroSum() : cmtk::GroupwiseRegistrationFunctionalBase
• SetForceZeroSumFirstN() : cmtk::GroupwiseRegistrationFunctionalBase
• SetForceZeroSumNoAffine() : cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform >
• SetForegroundMask() : cmtk::EntropyMinimizationIntensityCorrectionFunctionalDevice< NOrderAdd, NOrderMul > , cmtk::EntropyMinimizationIntensityCorrectionFunctionalBase
• SetFreeAndRereadImages() : cmtk::GroupwiseRegistrationFunctionalBase
• SetFromLabelMap() : cmtk::Study
• SetFromScalarImage() : cmtk::Image
• SetFromStudy() : cmtk::Colormap
• SetFunctional() : cmtk::GroupwiseRegistrationOutput
• SetGaussianSmoothImagesSigma() : cmtk::GroupwiseRegistrationFunctionalBase
• SetGridEnergyWeight() : cmtk::ImagePairSymmetricNonrigidRegistrationFunctional , cmtk::ImagePairSymmetricNonrigidRegistrationFunctionalTemplate< VM, W > , cmtk::SymmetricElasticFunctional , cmtk::SymmetricElasticFunctional_Template< VM >
• SetHighResCropRegion() : cmtk::UniformVolume
• SetImageOrigin() : cmtk::ScalarImage
• SetInactive() : cmtk::Renderer
• SetInitialAffineTransformation() : cmtk::SplineWarpMultiChannelRegistrationFunctional< TMetricFunctional >
• SetInput() : cmtk::ArrayFilter< I, O, InputDim > , cmtk::Drain< I > , cmtk::Filter< I, O > , cmtk::ImageToImageRGB , cmtk::PlaneSource , cmtk::Renderer
• SetInputImage() : cmtk::EntropyMinimizationIntensityCorrectionFunctionalDevice< NOrderAdd, NOrderMul > , cmtk::EntropyMinimizationIntensityCorrectionFunctionalBase
• SetInputXformPath() : cmtk::RegistrationDatabaseUpdater
• SetInterpolation() : cmtk::ReformatVolume
• SetInverseConsistencyWeight() : cmtk::ImagePairNonrigidRegistrationFunctional , cmtk::ImagePairSymmetricNonrigidRegistrationFunctional , cmtk::ImagePairSymmetricNonrigidRegistrationFunctionalTemplate< VM, W > , cmtk::SymmetricElasticFunctional , cmtk::SymmetricElasticFunctional_Template< VM > , cmtk::VoxelMatchingElasticFunctional_WarpTemplate< W >
• SetInverseTransformation() : cmtk::ImagePairNonrigidRegistrationFunctional , cmtk::VoxelMatchingElasticFunctional_WarpTemplate< W >
• SetJacobianConstraintWeight() : cmtk::ImagePairSymmetricNonrigidRegistrationFunctional , cmtk::ImagePairSymmetricNonrigidRegistrationFunctionalTemplate< VM, W > , cmtk::SplineWarpMultiChannelRegistrationFunctional< TMetricFunctional > , cmtk::SymmetricElasticFunctional , cmtk::SymmetricElasticFunctional_Template< VM >
• SetLevelsetThreshold() : cmtk::SimpleLevelset
• SetMakeName() : cmtk::Study
• SetMatrix() : cmtk::AffineXform
• SetMatrixDirect() : cmtk::AffineXform
• SetMaxNumBins() : cmtk::TypedArraySimilarityMemory
• SetMetaInfo() : cmtk::MetaInformationObject
• SetMinNumBins() : cmtk::TypedArraySimilarityMemory
• SetNormal() : cmtk::ParametricPlane
• SetNormalizedMI() : cmtk::MultiChannelRegistrationFunctionalBase
• SetNumberDOFs() : cmtk::AffineXform , cmtk::TemplateMultiChannelRegistrationFunctional< TXform, TMetricFunctional >
• SetNumberOfBins() : cmtk::FunctionalAffine2D
• SetNumberOfHistogramBins() : cmtk::CongealingFunctional< TXform > , cmtk::GroupwiseRegistrationFunctionalXformTemplateBase< TXform > , cmtk::EntropyMinimizationIntensityCorrectionFunctionalBase
• SetOffset() : cmtk::Volume
• SetOptimizer() : cmtk::MultiLevelOptimizer
• SetOrthoSlice() : cmtk::DataGrid
• SetOutputRootDirectory() : cmtk::GroupwiseRegistrationOutput
• SetOutputXform() : cmtk::RegistrationDatabaseUpdater
• SetPaddingAt() : cmtk::TemplateArray< T > , cmtk::TypedArray
• SetPaddingPtr() : cmtk::TemplateArray< T > , cmtk::TypedArray
• SetPaddingValue() : cmtk::TemplateArray< T > , cmtk::TypedArray , cmtk::ReformatVolume::Plain
• SetPaddingValueTemplate() : cmtk::TemplateArray< T >
• SetParameter() : cmtk::AffineXform , cmtk::Xform , cmtk::GroupwiseRegistrationFunctionalBase
• SetParameterActive() : cmtk::WarpXform
• SetParameterInactive() : cmtk::WarpXform
• SetParameters() : cmtk::ParametricPlane
• SetParametersActive() : cmtk::WarpXform
• SetParamVector() : cmtk::AffineXform , cmtk::Functional , cmtk::Xform , cmtk::FunctionalAffine2D , cmtk::GroupwiseRegistrationFunctionalBase , cmtk::TemplateMultiChannelRegistrationFunctional< TXform, TMetricFunctional > , cmtk::EntropyMinimizationIntensityCorrectionFunctional< NOrderAdd, NOrderMul >
• SetPartialGradientMode() : cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform >
• SetPassWeight() : cmtk::VolumeInjectionReconstruction
• SetPhi() : cmtk::ParametricPlane
• SetPixel() : cmtk::ImageRGB
• SetPixelAt() : cmtk::ScalarImage
• SetPlane() : cmtk::Slicer
• SetProbabilisticSampleDensity() : cmtk::GroupwiseRegistrationFunctionalBase
• SetProbabilisticSampleUpdatesAfter() : cmtk::GroupwiseRegistrationFunctionalBase
• SetProgramInfo() : cmtk::CommandLine
• SetProgress() : cmtk::Progress
• SetProgressBar() : cmtk::QtProgress
• SetProgressCurrent() : cmtk::Progress
• SetProgressInstance() : cmtk::Progress
• SetProgressWidgetMode() : cmtk::QtProgress
• SetProperties() : cmtk::CommandLine::Item , cmtk::CommandLine::KeyToAction , cmtk::CommandLine::KeyActionGroupType
• SetRange() : cmtk::HistogramBase
• SetRangeCentered() : cmtk::HistogramBase
• SetRangeCenteredX() : cmtk::JointHistogram< T >
• SetRangeCenteredY() : cmtk::JointHistogram< T >
• SetRangeX() : cmtk::JointHistogram< T >
• SetRangeY() : cmtk::JointHistogram< T >
• SetReferenceCount() : cmtk::Object
• SetReferenceImage() : cmtk::VolumeInjectionReconstruction
• SetReferenceVolume() : cmtk::ImagePairSimilarityJointHistogram , cmtk::ImagePairSimilarityMeasure , cmtk::ReformatVolume
• SetRefImage() : cmtk::FunctionalAffine2D
• SetRefImages() : cmtk::FunctionalAffine2D
• SetRepeatIntensityHistogramMatching() : cmtk::GroupwiseRegistrationFunctionalBase
• SetRho() : cmtk::ParametricPlane
• SetRigidityConstraintWeight() : cmtk::SymmetricElasticFunctional , cmtk::SymmetricElasticFunctional_Template< VM >
• SetROI() : cmtk::ScalarImage
• SetSamplingDensity() : cmtk::EntropyMinimizationIntensityCorrectionFunctionalBase
• SetScaleInitialSphere() : cmtk::SimpleLevelset
• SetScales() : cmtk::AffineXform
• SetShears() : cmtk::AffineXform
• SetShiftedControlPointPositionByOffset() : cmtk::WarpXform
• SetSliderLabelL() : cmtk::QtScrollRenderView
• SetSliderLabelR() : cmtk::QtScrollRenderView
• SetStandardColormap() : cmtk::Colormap
• SetTargetImages() : cmtk::GroupwiseRegistrationFunctionalBase
• SetTemplateGrid() : cmtk::CongealingFunctional< TXform > , cmtk::GroupwiseRegistrationFunctionalBase , cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > , cmtk::GroupwiseRegistrationRMIFunctional< TXform > , cmtk::SplineWarpCongealingFunctional
• SetTheta() : cmtk::ParametricPlane
• SetTimeDelta() : cmtk::SimpleLevelset
• SetToZero() : cmtk::DeviceMemory< T, DeviceMemoryGPU >
• SetTransformationsToPassImages() : cmtk::VolumeInjectionReconstruction
• SetType : cmtk::UnionFind< T >
• SetupHistogramKernels() : cmtk::VolumeInjectionReconstruction
• SetUseFourthOrderError() : cmtk::InverseInterpolationVolumeReconstructionBase
• SetUseLogIntensities() : cmtk::EntropyMinimizationIntensityCorrectionFunctionalBase
• SetUseLogScaleFactors() : cmtk::AffineXform
• SetUserBackgroundValue() : cmtk::GroupwiseRegistrationFunctionalBase
• SetUserDataType() : cmtk::ReformatVolume
• SetUseRegionalIntensityTruncation() : cmtk::InverseInterpolationVolumeReconstructionBase
• SetVerbose() : cmtk::AtlasSegmentation
• SetVolume() : cmtk::UniformVolumeInterpolatorBase , cmtk::VolumeWrapper , cmtk::SymmetryPlaneFunctional
• SetWarpXform() : cmtk::VolumeWrapper , cmtk::ImagePairNonrigidRegistrationFunctional , cmtk::ImagePairNonrigidRegistrationFunctionalTemplate< VM > , cmtk::ImagePairSymmetricNonrigidRegistrationFunctional , cmtk::ImagePairSymmetricNonrigidRegistrationFunctionalTemplate< VM, W > , cmtk::ParallelElasticFunctional< VM > , cmtk::ReformatVolume , cmtk::SymmetricElasticFunctional , cmtk::SymmetricElasticFunctional_Template< VM > , cmtk::VoxelMatchingElasticFunctional , cmtk::VoxelMatchingElasticFunctional_WarpTemplate< W >
• SetWriteCompressedOff() : cmtk::VolumeIO
• SetWriteCompressedOn() : cmtk::VolumeIO
• SetXformNumberDOFs() : cmtk::GroupwiseRegistrationFunctionalXformTemplate< AffineXform >
• SetXforms() : cmtk::GroupwiseRegistrationFunctionalBase , cmtk::GroupwiseRegistrationFunctionalXformTemplate< AffineXform >
• SetXlate() : cmtk::AffineXform
• ShowSlider() : cmtk::QtScrollRenderView
• SigmaSqI : cmtk::VoxelMatchingCorrRatio< I > , cmtk::ImagePairSimilarityMeasureCR
• SigmaSqJ : cmtk::ImagePairSimilarityMeasureCR , cmtk::VoxelMatchingCorrRatio< I >
• Sign() : cmtk::MathUtil
• Signal() : cmtk::ConditionVariable
• signalMouse3D() : cmtk::QtRenderImageRGB , cmtk::QtScrollRenderView
• signalMousePressed() : cmtk::QtScrollRenderView , cmtk::QtRenderImageRGB
• SignBit : cmtk::VolumeFromSlices
• SijbersBiasHat() : cmtk::TypedArrayNoiseEstimatorBrummer
• SijbersLogLikelihood() : cmtk::TypedArrayNoiseEstimatorBrummer
• SijbersVarHat() : cmtk::TypedArrayNoiseEstimatorBrummer
• SimpleLevelset() : cmtk::SimpleLevelset
• SimpleLevelsetCommandLineBase() : cmtk::SimpleLevelsetCommandLineBase
• SimpleLevelsetDevice() : cmtk::SimpleLevelsetDevice
• SimpleLevelsetImplementation : cmtk::SimpleLevelsetCommandLine< TImpl >
• Sin() : cmtk::MathUtil
• Size : cmtk::Volume , cmtk::VolumeFromSlices , cmtk::Region< NDIM, T >
• Slicer() : cmtk::Slicer
• Slider : cmtk::QtSliderEntry
• slotAddLandmark() : cmtk::QtTriplanarWindow
• slotAddStudy() : cmtk::QtTriplanarViewer
• slotCenter() : cmtk::QtSliderEntry , cmtk::QtTriplanarWindow
• slotColormapChanged() : cmtk::QtTriplanarWindow
• slotConnectImage() : cmtk::QtScrollRenderView
• slotControlsChanged() : cmtk::QtWindowLevelControls
• slotCopyColormapToOtherImages() : cmtk::QtTriplanarViewer
• slotDataChanged() : cmtk::QtTriplanarWindow
• slotDeleteLandmark() : cmtk::QtTriplanarWindow
• slotEditReturnPressed() : cmtk::QtSliderEntry
• slotExportImage() : cmtk::QtTriplanarWindow
• slotExportLandmarks() : cmtk::QtTriplanarWindow
• slotExportMenuCmd() : cmtk::QtTriplanarWindow
• slotGoToLandmark() : cmtk::QtTriplanarWindow
• slotGoToLocation() : cmtk::QtTriplanarWindow
• slotGoToPixel() : cmtk::QtTriplanarWindow
• slotImportLandmarks() : cmtk::QtTriplanarWindow
• slotLoadFile() : cmtk::QtTriplanarViewer
• slotMouse3D() : cmtk::QtTriplanarWindow
• slotMouseAx() : cmtk::QtTriplanarWindow
• slotMouseCo() : cmtk::QtTriplanarWindow
• slotMouseSa() : cmtk::QtTriplanarWindow
• slotOperatorAbs() : cmtk::QtImageOperators
• slotOperatorExp() : cmtk::QtImageOperators
• slotOperatorHistEq() : cmtk::QtImageOperators
• slotOperatorLog() : cmtk::QtImageOperators
• slotOperatorMedian() : cmtk::QtImageOperators
• slotOperatorSobel() : cmtk::QtImageOperators
• slotReloadData() : cmtk::QtTriplanarViewer
• slotRender() : cmtk::QtScrollRenderView
• slotRenderAll() : cmtk::QtTriplanarWindow
• slotSelectColormap() : cmtk::QtWindowLevelControls
• slotSetCheckerboardMode() : cmtk::QtTriplanarWindow
• slotSetColormap() : cmtk::QtTriplanarWindow
• slotSetCrosshairMode() : cmtk::QtTriplanarWindow
• slotSetInterpolateMode() : cmtk::QtTriplanarWindow
• slotSetMinMaxLabels() : cmtk::QtSliderEntry
• slotSetNumberOfSlices() : cmtk::QtScrollRenderView
• slotSetPrecision() : cmtk::QtSliderEntry
• slotSetRange() : cmtk::QtSliderEntry
• slotSetSlice() : cmtk::QtScrollRenderView
• slotSetStudy() : cmtk::QtWindowLevelControls , cmtk::QtWindowLevelDialog
• slotSetTitle() : cmtk::QtSliderEntry
• slotSetValue() : cmtk::QtSliderEntry
• slotSetWindowLevel() : cmtk::QtTriplanarWindow
• slotSetZoom() : cmtk::QtTriplanarWindow
• slotSliderValueChanged() : cmtk::QtSliderEntry
• slotSwitchImageAx() : cmtk::QtTriplanarWindow
• slotSwitchImageCo() : cmtk::QtTriplanarWindow
• slotSwitchImageSa() : cmtk::QtTriplanarWindow
• slotSwitchModeWL() : cmtk::QtWindowLevelControls
• slotSwitchStudy() : cmtk::QtTriplanarViewer
• slotSwitchToStudy() : cmtk::QtTriplanarWindow
• slotSwitchToStudyInternal() : cmtk::QtTriplanarWindow
• slotView100() : cmtk::QtTriplanarWindow
• slotView200() : cmtk::QtTriplanarWindow
• slotView25() : cmtk::QtTriplanarWindow
• slotView300() : cmtk::QtTriplanarWindow
• slotView33() : cmtk::QtTriplanarWindow
• slotView400() : cmtk::QtTriplanarWindow
• slotView50() : cmtk::QtTriplanarWindow
• slotView500() : cmtk::QtTriplanarWindow
• slotViewCheckerbox() : cmtk::QtTriplanarWindow
• slotViewCrosshair() : cmtk::QtTriplanarWindow
• slotViewInterpolation() : cmtk::QtTriplanarWindow
• SmartConstPointer : cmtk::SmartConstPointer< T >
• SmartConstPtr : cmtk::AffineXform , cmtk::AffineXformUniformVolume , cmtk::DataGrid , cmtk::ImageTemplate< TPixelType > , cmtk::Region< NDIM, T > , cmtk::RegionIndexIterator< NDIM, T > , cmtk::SplineWarpXform , cmtk::SplineWarpXformUniformVolume , cmtk::TypedArray , cmtk::UniformVolume , cmtk::UniformVolumeInterpolatorBase , cmtk::WarpXform , cmtk::Xform , cmtk::XformListEntry , cmtk::XformUniformVolume , cmtk::DeviceArrayTemplate< DeviceArrayGPU > , cmtk::DeviceMemory< T, DeviceMemoryGPU > , cmtk::DeviceMemoryCL , cmtk::DeviceMemoryCUDA , cmtk::ImageSymmetryPlaneCommandLine< TFunctional > , cmtk::XformList , cmtk::DeviceArrayCUDA , cmtk::ScalarImage , cmtk::FixedVector< NDIM, T >
• SmartPointer : cmtk::SmartPointer< T >
• SmartPointer< Self > : cmtk::ImagePairNonrigidRegistrationFunctional
• SmartPtr : cmtk::ImagePairAffineRegistrationFunctional , cmtk::ImagePairAffineRegistrationCommandLine , cmtk::ImagePairNonrigidRegistrationFunctionalTemplate< VM > , cmtk::FunctionalAffine2D , cmtk::ImagePairSimilarityMeasure , cmtk::ImagePairSimilarityMeasureNMI , cmtk::GroupwiseRegistrationFunctionalAffineInitializer , cmtk::ImagePairRegistration , cmtk::GroupwiseRegistrationFunctionalXformTemplateBase< TXform > , cmtk::UniformVolume , cmtk::ImagePairAffineRegistrationFunctionalDevice , cmtk::DeviceMemoryCUDA , cmtk::CongealingFunctional< TXform > , cmtk::ImageSymmetryPlaneFunctionalDevice , cmtk::DeviceArrayCUDA , cmtk::UniformVolumeInterpolator< TInterpolationFunction > , cmtk::XformList , cmtk::WarpXform , cmtk::CommandLine::KeyToAction , cmtk::VoxelMatchingMetric< T, DT, I > , cmtk::DeviceHistogram , cmtk::VoxelMatchingNormMutInf< I > , cmtk::TransformedVolumeAxes , cmtk::SplineWarpGroupwiseRegistrationRMIFunctional , cmtk::ScalarImage , cmtk::Region< NDIM, T > , cmtk::Matrix4x4< T > , cmtk::SplineWarpMultiChannelRegistrationFunctional< TMetricFunctional > , cmtk::MatchedLandmark , cmtk::LandmarkList , cmtk::JointHistogramBase , cmtk::JointHistogram< T > , cmtk::ImageInterpolator< TImageType, TInterpolationFunction > , cmtk::Histogram< T > , cmtk::ImagePairSimilarityMeasureRMS , cmtk::Volume , cmtk::ActiveShapeModel , cmtk::AffineXform , cmtk::AffineXformUniformVolume , cmtk::BitVector , cmtk::DataGrid , cmtk::DeformationField , cmtk::MultiChannelHistogramRegistrationFunctional< TDataType, TInterpolator, THashKeyType, NBitsPerChannel > , cmtk::SplineWarpXform , cmtk::FilterMaskPixel< DIM > , cmtk::FilterMask< DIM > , cmtk::FixedVector< NDIM, T > , cmtk::Functional , cmtk::GeneralLinearModel , cmtk::TypedArray , cmtk::ImageTemplate< TPixelType > , cmtk::TemplateArray< T > , cmtk::MatchedLandmarkList , cmtk::Matrix2D< T > , cmtk::Matrix3D< T > , cmtk::RegionIndexIterator< NDIM, T > , cmtk::ParametricPlane , cmtk::SplineWarpXformUniformVolume , cmtk::UniformDistanceMap< TDistanceDataType > , cmtk::ImageOperation , cmtk::UniformVolumeInterpolatorPartialVolume , cmtk::UniformVolumePainter , cmtk::Vector< T > , cmtk::LogHistogram< T > , cmtk::Landmark , cmtk::XformUniformVolume , cmtk::DeviceMemory< T, DeviceMemoryGPU > , cmtk::DirectionSet , cmtk::DeviceUniformVolumeArray , cmtk::EntropyMinimizationIntensityCorrectionFunctionalDevice< NOrderAdd, NOrderMul > , cmtk::Study , cmtk::PointSpreadFunctions::Gaussian , cmtk::AffineRegistrationCommandLine , cmtk::ElasticRegistrationCommandLine , cmtk::ActiveDeformationModel< W > , cmtk::GroupwiseRegistrationFunctionalXformTemplate< TXform > , cmtk::GroupwiseRegistrationFunctionalXformTemplate< AffineXform > , cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > , cmtk::GroupwiseRegistrationRMIFunctional< TXform > , cmtk::AnatomicalOrientation::PermutationMatrix , cmtk::ImagePairNonrigidRegistrationCommandLine , cmtk::ImagePairRegistration::LevelParameters , cmtk::ImagePairSimilarityMeasureMI , cmtk::ImagePairSimilarityMeasureMSD , cmtk::ImagePairSimilarityMeasureNCC , cmtk::Xform , cmtk::UniformVolumeInterpolatorBase , cmtk::ImageSymmetryPlaneFunctional , cmtk::MultiChannelRegistrationFunctionalBase , cmtk::ReformatVolume , cmtk::RegistrationCallback , cmtk::RegistrationJointHistogram< I > , cmtk::DeviceArrayTemplate< DeviceArrayGPU > , cmtk::SymmetricElasticFunctional_Template< VM > , cmtk::TemplateMultiChannelRegistrationFunctional< TXform, TMetricFunctional > , cmtk::VoxelMatchingAffineFunctionalTemplate< VM > , cmtk::VoxelMatchingElasticFunctional_WarpTemplate< W > , cmtk::VoxelMatchingMeanSquaredDifference , cmtk::DeviceMemoryCL , cmtk::XformListEntry , cmtk::CommandLine::NonOptionParameter , cmtk::CommandLine::EnumGroupBase , cmtk::CompressedStream::ReaderBase , cmtk::CompressedStream::File , cmtk::CompressedStream::Pipe , cmtk::ThreadPool , cmtk::ImageSymmetryPlaneFunctionalBase , cmtk::StudyList , cmtk::VoxelMatchingCorrRatio< I > , cmtk::EntropyMinimizationIntensityCorrectionFunctional< NOrderAdd, NOrderMul > , cmtk::SplineWarpMultiChannelIntensityCorrectionRegistrationFunctional< TMetricFunctional > , cmtk::TypedStreamStudylist , cmtk::VoxelMatchingMutInf< I > , cmtk::DeviceUniformVolume , cmtk::MultiChannelRMIRegistrationFunctional< TRealType, TDataType, TInterpolator > , cmtk::AffineMultiChannelRegistrationFunctional< TMultiChannelMetricFunctional > , cmtk::CommandLine::KeyToActionEnum , cmtk::CommandLine::EnumGroup< TDataType > , cmtk::PointSpreadFunctions::Box , cmtk::GroupwiseRegistrationFunctionalBase , cmtk::ImagePairNonrigidRegistrationFunctional , cmtk::ImagePairSimilarityJointHistogram , cmtk::ImagePairAffineRegistrationFunctionalTemplate< VM > , cmtk::CommandLine::NonOptionParameterVector , cmtk::ImagePairSymmetricNonrigidRegistrationFunctional , cmtk::ImagePairSymmetricNonrigidRegistrationFunctionalTemplate< VM, W > , cmtk::ImagePairSimilarityMeasureCR , cmtk::MultiChannelRegistrationFunctional< TInterpolator > , cmtk::CompressedStream::Zlib , cmtk::CommandLine::KeyToActionSingle , cmtk::CommandLine::KeyActionGroupType , cmtk::ImageSymmetryPlaneCommandLine< TFunctional > , cmtk::VoxelMatchingCrossCorrelation , cmtk::VoxelMatchingElasticFunctional , cmtk::VoxelMatchingAffineFunctional , cmtk::CommandLine::Item , cmtk::SymmetryPlaneFunctional , cmtk::SymmetricElasticFunctional , cmtk::EntropyMinimizationIntensityCorrectionFunctionalBase , cmtk::MultiLevelOptimizer::FunctionalWithStepSizes , cmtk::SplineWarpCongealingFunctional , cmtk::Optimizer
• Sort() : cmtk::Vector< T >
• Source() : cmtk::Source< O >
• SPACE_CMTK : cmtk::AnatomicalOrientationBase
• SPACE_ITK : cmtk::AnatomicalOrientationBase
• SpaceVectorType : cmtk::ScalarImage , cmtk::Xform , cmtk::DataGrid , cmtk::SurfaceNormal
• Spacing : cmtk::WarpXform , cmtk::VolumeFromSlices
• SplineWarpGroupwiseRegistrationRMIFunctional() : cmtk::SplineWarpGroupwiseRegistrationRMIFunctional
• SplineWarpMultiChannelIntensityCorrectionRegistrationFunctional : cmtk::SplineWarpMultiChannelRegistrationFunctional< TMetricFunctional >
• SplineWarpMultiChannelRegistrationFunctional() : cmtk::SplineWarpMultiChannelRegistrationFunctional< TMetricFunctional > , cmtk::AffineMultiChannelRegistrationFunctional< TMultiChannelMetricFunctional > , cmtk::SplineWarpMultiChannelRegistrationFunctional< TMetricFunctional >
• SplineWarpXform() : cmtk::SplineWarpXform
• SplineWarpXformUniformVolume : cmtk::WarpXform , cmtk::SplineWarpXform , cmtk::SplineWarpXformUniformVolume
• splineX : cmtk::SplineWarpXform , cmtk::SplineWarpXformUniformVolume
• splineXform : cmtk::ReformatVolume::GetTransformedReferenceTP
• splineY : cmtk::SplineWarpXform , cmtk::SplineWarpXformUniformVolume
• splineZ : cmtk::SplineWarpXformUniformVolume , cmtk::SplineWarpXform
• SplitPosition : cmtk::TypedStream
• SQLite() : cmtk::SQLite
• Square() : cmtk::MathUtil
• SquareNormal : cmtk::ParametricPlane
• StackBacktrace() : cmtk::StackBacktrace
• StandardColormaps : cmtk::Colormap
• StartThreads() : cmtk::ThreadPool
• StartZ : cmtk::ImagePairAffineRegistrationFunctionalTemplate< VM >::EvaluateTaskInfo , cmtk::VoxelMatchingAffineFunctionalTemplate< VM >::EvaluateTaskInfo
• Stat() : cmtk::CompressedStream
• StaticThis : cmtk::ImagePairNonrigidRegistrationCommandLine , cmtk::ElasticRegistrationCommandLine
• Status : cmtk::TypedStream
• StatusBar : cmtk::QtTriplanarWindow
• Step : cmtk::ImagePairNonrigidRegistrationFunctionalTemplate< VM >::EvaluateGradientTaskInfo , cmtk::ParallelElasticFunctional< VM >::EvaluateGradientTaskInfo
• StepFactor : cmtk::BestNeighbourOptimizer , cmtk::IterativeDirectionOptimizer , cmtk::BestDirectionOptimizer
• StepScaleVector : cmtk::VoxelMatchingElasticFunctional
• StoreField() : cmtk::FileHeader
• StoreFieldString() : cmtk::FileHeader
• StringCmp() : cmtk::TypedStream
• StringSplit() : cmtk::TypedStream
• StudholmeFilter() : cmtk::FilterVolume
• Study() : cmtk::Study
• Study1 : cmtk::ImagePairAffineRegistrationCommandLine , cmtk::ImagePairNonrigidRegistrationCommandLine , cmtk::AffineRegistrationCommandLine , cmtk::ElasticRegistrationCommandLine
• Study2 : cmtk::ImagePairNonrigidRegistrationCommandLine , cmtk::AffineRegistrationCommandLine , cmtk::ElasticRegistrationCommandLine , cmtk::ImagePairAffineRegistrationCommandLine
• StudyDataValid() : cmtk::QtImageOperators
• StudyImageSet() : cmtk::StudyImageSet
• Studylist : cmtk::ImagePairAffineRegistrationCommandLine , cmtk::AffineRegistrationCommandLine , cmtk::ImagePairNonrigidRegistrationCommandLine
• StudyList() : cmtk::StudyList
• Studylist : cmtk::ElasticRegistrationCommandLine
• StudyList() : cmtk::StudyList
• StudyPath : cmtk::TypedStreamStudylist
• suffix : cmtk::CompressedStream::ArchiveLookupEntry
• Sum : cmtk::ValueSequence< T > , cmtk::FixedVector< NDIM, T > , cmtk::VoxelMatchingMeanSquaredDifference , cmtk::Accumulators::Sum< TDataType >
• SumAbs : cmtk::ValueSequence< T >
• SumI : cmtk::VoxelMatchingCorrRatio< I > , cmtk::ImagePairSimilarityMeasureCR
• SumI2 : cmtk::ImagePairSimilarityMeasureCR , cmtk::VoxelMatchingCorrRatio< I >
• SumJ : cmtk::VoxelMatchingCorrRatio< I > , cmtk::ImagePairSimilarityMeasureCR
• SumJ2 : cmtk::ImagePairSimilarityMeasureCR , cmtk::VoxelMatchingCorrRatio< I >
• SumOfSquares() : cmtk::FixedVector< NDIM, T > , cmtk::ValueSequence< T >
• SumsAndProductsVectorType : cmtk::GroupwiseRegistrationRMIFunctional< TXform >
• SumSqX : cmtk::ImagePairSimilarityMeasureNCC , cmtk::VoxelMatchingCrossCorrelation
• SumSqY : cmtk::VoxelMatchingCrossCorrelation , cmtk::ImagePairSimilarityMeasureNCC
• SumX : cmtk::ImagePairSimilarityMeasureNCC , cmtk::VoxelMatchingCrossCorrelation
• SumXY : cmtk::VoxelMatchingCrossCorrelation , cmtk::ImagePairSimilarityMeasureNCC
• SumY : cmtk::VoxelMatchingCrossCorrelation , cmtk::ImagePairSimilarityMeasureNCC
• Superclass : cmtk::ImageSymmetryPlaneFunctionalBase , cmtk::ProgressConsole , cmtk::VoxelMatchingElasticFunctional_WarpTemplate< W > , cmtk::VoxelMatchingAffineFunctionalTemplate< VM > , cmtk::ImageXformDB , cmtk::AffineXformUniformVolume , cmtk::TypedArrayNoiseEstimatorMaximumLikelihood , cmtk::VoxelMatchingElasticFunctional , cmtk::SymmetryPlaneFunctional , cmtk::CommandLine::NonOptionParameter , cmtk::GroupwiseRegistrationFunctionalXformTemplateBase< TXform > , cmtk::UniformVolume , cmtk::AffineMultiChannelRegistrationFunctional< TMultiChannelMetricFunctional > , cmtk::GroupwiseRegistrationFunctionalBase , cmtk::StudyList , cmtk::Optimizer , cmtk::TemplateMultiChannelRegistrationFunctional< TXform, TMetricFunctional > , cmtk::ImagePairSimilarityMeasureRMS , cmtk::MultiChannelRegistrationFunctional< TInterpolator > , cmtk::ProtocolCallback , cmtk::Matrix< TElement, NDim > , cmtk::QGraphicsPixmapItemEvents , cmtk::ImagePairSimilarityMeasureMSD , cmtk::ImagePairNonrigidRegistrationFunctionalTemplate< VM > , cmtk::ImagePairSimilarityJointHistogram , cmtk::Drain< I > , cmtk::ImagePairAffineRegistrationFunctionalTemplate< VM > , cmtk::GroupwiseRegistrationFunctionalXformTemplate< TXform > , cmtk::ImageTemplate< TPixelType > , cmtk::ImagePairAffineRegistrationFunctional , cmtk::LogHistogram< T > , cmtk::AffineRegistration , cmtk::EntropyMinimizationIntensityCorrectionFunctionalBase , cmtk::CongealingFunctional< TXform > , cmtk::DeviceMemory< T, DeviceMemoryGPU > , cmtk::QtProgress , cmtk::Volume , cmtk::ImageToImageRGB , cmtk::DeviceArrayTemplate< DeviceArrayGPU > , cmtk::SplineWarpMultiChannelIntensityCorrectionRegistrationFunctional< TMetricFunctional > , cmtk::FilterMask< DIM > , cmtk::VoxelMatchingFunctional , cmtk::ParallelElasticFunctional< VM > , cmtk::BestDirectionOptimizer , cmtk::EntropyMinimizationIntensityCorrectionFunctionalDevice< NOrderAdd, NOrderMul > , cmtk::SplineWarpXformUniformVolume , cmtk::Matrix3D< T > , cmtk::ImagePairAffineRegistrationFunctionalDevice , cmtk::Histogram< T > , cmtk::DeformationField , cmtk::GroupwiseRegistrationFunctionalXformTemplate< AffineXform > , cmtk::SymmetricElasticFunctional_Template< VM > , cmtk::MultiChannelHistogramRegistrationFunctional< TDataType, TInterpolator, THashKeyType, NBitsPerChannel > , cmtk::GroupwiseRegistrationRMIFunctional< TXform > , cmtk::CommandLine::KeyToActionSingle , cmtk::ImagePairNonrigidRegistrationCommandLine , cmtk::ImagePairRegistrationFunctional , cmtk::Matrix2D< T > , cmtk::InverseInterpolationVolumeReconstructionBase , cmtk::TypedArrayNoiseEstimatorBrummer , cmtk::ImagePairAffineRegistration , cmtk::SplineWarpCongealingFunctional , cmtk::ImagePairNonrigidRegistrationFunctional , cmtk::VoxelMatchingNormMutInf< I > , cmtk::SplineWarpGroupwiseRegistrationRMIFunctional , cmtk::InverseInterpolationVolumeReconstruction< TInterpolator > , cmtk::UniformVolumeInterpolator< TInterpolationFunction > , cmtk::ImagePairSymmetricNonrigidRegistrationFunctionalTemplate< VM, W > , cmtk::ImageSymmetryPlaneCommandLine< TFunctional > , cmtk::EntropyMinimizationIntensityCorrectionFunctional< NOrderAdd, NOrderMul > , cmtk::StudyImageSet , cmtk::SplineWarpMultiChannelRegistrationFunctional< TMetricFunctional > , cmtk::ElasticRegistrationCommandLine , cmtk::ImageOperationReplace , cmtk::CommandLine::NonOptionParameterVector , cmtk::SplineWarpXform , cmtk::MultiChannelRMIRegistrationFunctional< TRealType, TDataType, TInterpolator > , cmtk::UniformDistanceMap< TDistanceDataType > , cmtk::VoxelMatchingAffineFunctional , cmtk::ImagePairAffineRegistrationCommandLine , cmtk::BestNeighbourOptimizer , cmtk::ImagePairNonrigidRegistration , cmtk::AnatomicalOrientation , cmtk::MultiChannelRegistrationFunctionalBase , cmtk::AffineXform , cmtk::SymmetricElasticFunctional , cmtk::SmartPointer< T > , cmtk::ElasticRegistration , cmtk::GroupwiseRegistrationFunctionalXformTemplate< SplineWarpXform > , cmtk::Slicer , cmtk::SimpleLevelsetDevice , cmtk::ImageSymmetryPlaneFunctional , cmtk::ImagePairSymmetricNonrigidRegistrationFunctional , cmtk::AffineRegistrationCommandLine , cmtk::DeblurringVolumeReconstruction< TPSF > , cmtk::CommandLine::KeyToActionEnum , cmtk::ImageSymmetryPlaneFunctionalDevice , cmtk::TemplateArray< T > , cmtk::Renderer , cmtk::FunctionalAffine2D
• SurfaceNormal() : cmtk::SurfaceNormal
• SVD() : cmtk::MathUtil
• SVDLinearRegression() : cmtk::MathUtil
• Switch() : cmtk::CommandLine::Switch< T > , cmtk::CommandLine
• SwitchVolumes : cmtk::VoxelRegistration
• SymmetricElasticFunctional_Template() : cmtk::SymmetricElasticFunctional_Template< VM >
• SymmetryPlaneFunctional() : cmtk::SymmetryPlaneFunctional
• SYMPL_INIT_XY : cmtk::ImageSymmetryPlaneCommandLineBase
• SYMPL_INIT_XZ : cmtk::ImageSymmetryPlaneCommandLineBase
• SYMPL_INIT_YZ : cmtk::ImageSymmetryPlaneCommandLineBase